View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10146_low_1 (Length: 619)
Name: NF10146_low_1
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 33792467 - 33792989
Alignment:
| Q |
1 |
atatttgaacccatattgtttttccaacaccttaagccacaaagtttgctatgaacccctagaattattgatatcctattttcatttaggagttattgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33792467 |
atatttgaacccatattgtttttccaacaccttaagccacaaagtttgctatgaacccctagaattattgacatcctattttcatttaggagttattgac |
33792566 |
T |
|
| Q |
101 |
aaattctattaagattgactatcatatatcatctcnnnnnnntctagactattttcatgttttgaaaattttgtccaatattatgtgtctgacaccaacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
33792567 |
aaattctattaagattgactatcatatatcatctcaaaaaaatctagattattttcatgttttgaaaattttgtccaatcttatgcgtctgacaccaacc |
33792666 |
T |
|
| Q |
201 |
ttcatctttcagtccatcggttgatgtctatgagcataaaactatagtcatatggttatcgatctaatcctatttgctagtatcaagttttttctttcgg |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33792667 |
ttcatctttcagtccatcagttgatgtctatgagcataaaactatagtcatatggttatcgatctaatcctatttgctagtatcaagttttttctttcgg |
33792766 |
T |
|
| Q |
301 |
tacattgcctatttagtattagataattataaagaatgataaaattgaattataaggttttgagattccacttcttc----nnnnnnnnggttttgagat |
396 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33792767 |
tacatttcctatttaggataagataattataaagaatgatacaattgaatcataaggttttgagattccacttcttcaaaaaaaaaaatggttttgagat |
33792866 |
T |
|
| Q |
397 |
tccatnnnnnnnntaaaatagaattgacattatgtaaagtgtatcatttaatttctttccatgatcccaagactttaggagcctaattgctcatcatcat |
496 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33792867 |
tccataaaaaa---aaaatagaattgacattatgtaaagtgtatcatttaatttctttccatgatcccaagactttaggagcctaattgctcatcatcat |
33792963 |
T |
|
| Q |
497 |
agtagacaaaacaacataagatgaaa |
522 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33792964 |
agtagacaaaacaacataagatgaaa |
33792989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University