View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10146_low_10 (Length: 376)
Name: NF10146_low_10
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_10 |
 | |
|
| [»] scaffold0557 (7 HSPs) |
| | |
|
| [»] scaffold0442 (6 HSPs) |
| | |
|
| [»] scaffold0115 (5 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 21005711 - 21006061
Alignment:
| Q |
16 |
atttcacctgccaacattattccaactcctcttgttgttatccaaaactttaagcctcaaatctatcctgcaagtgttcaacaggagaagaacaacaccg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
21005711 |
atttcacctgccaacattattccaactcctcttgttgttatccaaaactttaagcctcaaatctaccctgcaagtgttcaacaggagaagaataacaccg |
21005810 |
T |
|
| Q |
116 |
tcatgattgctatggtttcaactcctagtagtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaacaccctcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21005811 |
tcatgattgctatggtttcaactcctagtagtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaacaccctcaa |
21005910 |
T |
|
| Q |
216 |
gagtacgatgattccacatcctggtgttgatcaaccagagaagaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21005911 |
gagtacgatgattccacatcctggtgttgatcaaccagagaagaacaacatgagtactatgattccaaatcacaatgtcaatcaaaacatgcagcgtcaa |
21006010 |
T |
|
| Q |
316 |
atctattctgaaagtgttcaacaaaacaagaacaccatcatgagtcctatg |
366 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21006011 |
atctatcctgaaagtgttcaacaaaacaagaacaccatcatgagtactatg |
21006061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 20921838 - 20921951
Alignment:
| Q |
253 |
gagaagaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacca |
352 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | ||||| ||| |||||| ||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
20921838 |
gagaagaacaacatgagtactatgattccaaatcacggtatcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacacca |
20921937 |
T |
|
| Q |
353 |
tcatgagtcctatg |
366 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
20921938 |
tcatgagtactatg |
20921951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 366
Target Start/End: Original strand, 20903234 - 20903345
Alignment:
| Q |
255 |
gaagaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatc |
354 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| ||| ||| |||||| | ||||||||| | | |||||||||||| ||||||||||||||| |
|
|
| T |
20903234 |
gaagaacaacatgagtactatgattccaaatcagggtgttaatcaaagcatgcaacatcaaatctacaccggaagtgttcaacagaacaagaacaccatc |
20903333 |
T |
|
| Q |
355 |
atgagtcctatg |
366 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
20903334 |
atgagtactatg |
20903345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 246 - 366
Target Start/End: Original strand, 41336383 - 41336503
Alignment:
| Q |
246 |
tcaaccagagaagaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaag |
345 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||| ||||||||||| ||| |||||||||||| |||||| |
|
|
| T |
41336383 |
tcaaccagagaagaacaacatgagtactatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaag |
41336482 |
T |
|
| Q |
346 |
aacaccatcatgagtcctatg |
366 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
41336483 |
aacaccatcatgagtactatg |
41336503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 249
Target Start/End: Original strand, 41336427 - 41336527
Alignment:
| Q |
146 |
gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaacaccctcaagagtacgatgattccacatcctggtgttga |
245 |
Q |
| |
|
|||| ||||||| |||||| | |||||||||| || |||||||||||| |||||| |||||| ||| |||||| ||| ||||| |||||||||| | |
|
|
| T |
41336427 |
gtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaag---aacaccatcatgagtactatggttccaactcctggtgttaa |
41336523 |
T |
|
| Q |
246 |
tcaa |
249 |
Q |
| |
|
|||| |
|
|
| T |
41336524 |
tcaa |
41336527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 253 - 366
Target Start/End: Complemental strand, 5981 - 5868
Alignment:
| Q |
253 |
gagaagaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacca |
352 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||| ||| ||| |||||| ||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
5981 |
gagaagaacaacatgagtactatgattccaaattacggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaaaacaagaacacca |
5882 |
T |
|
| Q |
353 |
tcatgagtcctatg |
366 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
5881 |
tcatgagtactatg |
5868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 5071 - 5184
Alignment:
| Q |
253 |
gagaagaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacca |
352 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||| ||| ||| ||| |||| ||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
5071 |
gagaagaacaacatgaatactatgattctaaatcacagtgttaattaaagcatgtagcgtcaaatctaccctagaagtgttcaacaaaacaagaacacca |
5170 |
T |
|
| Q |
353 |
tcatgagtcctatg |
366 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
5171 |
tcgtgagtactatg |
5184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 6031 - 5969
Alignment:
| Q |
146 |
gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca |
208 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
6031 |
gtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacaggagaagaacaaca |
5969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 5944 - 5885
Alignment:
| Q |
146 |
gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca |
205 |
Q |
| |
|
|||| ||||||| |||||| | ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5944 |
gtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaaaacaagaaca |
5885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 6009 - 5969
Alignment:
| Q |
72 |
tcaaatctatcctgcaagtgttcaacaggagaagaacaaca |
112 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
6009 |
tcaaatctaccatgcaagtgttcaacaggagaagaacaaca |
5969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 5021 - 5083
Alignment:
| Q |
146 |
gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca |
208 |
Q |
| |
|
|||| |||||||||||||| | |||||||||| ||| |||||||||||| | |||||||||| |
|
|
| T |
5021 |
gtgttaatcaaaacatgcaccatcaaatctacaatgaaagtgttcaacatgagaagaacaaca |
5083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 5107 - 5167
Alignment:
| Q |
145 |
agtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca |
205 |
Q |
| |
|
||||| ||| ||| |||| ||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
5107 |
agtgttaattaaagcatgtagcgtcaaatctaccctagaagtgttcaacaaaacaagaaca |
5167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 366
Target Start/End: Complemental strand, 9374 - 9262
Alignment:
| Q |
254 |
agaagaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacaccat |
353 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || ||| ||| ||| |||||| | ||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
9374 |
agaagaacaacatgagtactatgattccaaattacggtgttaatcaaagcatgcaacttcaaatctaccctggaagtgttcaacaaaacaagaacaccat |
9275 |
T |
|
| Q |
354 |
catgagtcctatg |
366 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
9274 |
catgagtactatg |
9262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 8436 - 8549
Alignment:
| Q |
253 |
gagaagaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacca |
352 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||| ||| ||| ||| |||||| ||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
8436 |
gagaagaacaacatgaatactatgattctaaatcacggtgttaattaaagcatgcaacgtcaaatcaaccctagaagtgttcaacaaaacaagaacacca |
8535 |
T |
|
| Q |
353 |
tcatgagtcctatg |
366 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
8536 |
ttgtgagtactatg |
8549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 9425 - 9363
Alignment:
| Q |
146 |
gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca |
208 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
9425 |
gtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacagtagaagaacaaca |
9363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 9338 - 9279
Alignment:
| Q |
146 |
gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca |
205 |
Q |
| |
|
|||| ||||||| |||||| | ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
9338 |
gtgttaatcaaagcatgcaacttcaaatctaccctggaagtgttcaacaaaacaagaaca |
9279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 8386 - 8448
Alignment:
| Q |
146 |
gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca |
208 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
8386 |
gtgttaatcaaaacatgcaccatcaaatctaccataaaagtgttcaacatgagaagaacaaca |
8448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 9403 - 9363
Alignment:
| Q |
72 |
tcaaatctatcctgcaagtgttcaacaggagaagaacaaca |
112 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||||||||| |
|
|
| T |
9403 |
tcaaatctaccatgcaagtgttcaacagtagaagaacaaca |
9363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 46924 - 47037
Alignment:
| Q |
253 |
gagaagaacaacacgagtactatgattccaaatcacaatgtcaataaaaacatgcagcgtcaaatctattctgaaagtgttcaacaaaacaagaacacca |
352 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||| ||| ||| ||| |||||| ||||||||||| ||| ||||||||||||| ||||||||| || |
|
|
| T |
46924 |
gagaagaacaacatgagtaccatgattccaaatcacggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaatacaagaacatca |
47023 |
T |
|
| Q |
353 |
tcatgagtcctatg |
366 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
47024 |
tcgtgagtactatg |
47037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 46896 - 46936
Alignment:
| Q |
72 |
tcaaatctatcctgcaagtgttcaacaggagaagaacaaca |
112 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
46896 |
tcaaatctaccatgcaagtgttcaacaggagaagaacaaca |
46936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 46961 - 47020
Alignment:
| Q |
146 |
gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca |
205 |
Q |
| |
|
|||| ||||||| |||||| | ||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
46961 |
gtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaatacaagaaca |
47020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 48039 - 47989
Alignment:
| Q |
310 |
cgtcaaatctattctgaaagtgttcaacaaaacaagaacaccatcatgagt |
360 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
48039 |
cgtcaaatctagcttgtaagtgttcaacaaaacaagaacaccatcgtgagt |
47989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 46896 - 46936
Alignment:
| Q |
168 |
tcaaatctaccatgcaagtgttcaacaaaacaagaacaaca |
208 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
46896 |
tcaaatctaccatgcaagtgttcaacaggagaagaacaaca |
46936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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