View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10146_low_12 (Length: 346)

Name: NF10146_low_12
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10146_low_12
NF10146_low_12
[»] chr7 (1 HSPs)
chr7 (24-263)||(41379570-41379813)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 41379570 - 41379813
Alignment:
Q  24 tattattattagcaatttgaacgggacaaaaacaaagtagttaaacatttaaattctcattcaaagagacgtaactactcatatcaccaaatgtggtaga 123  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41379570 tattattattagcaatttgaacgggacaaaaacaaaatagttaaacatttaaattctcattcaaagagacgtaactactcatatcaccaaatgtggtaga 41379669  T
Q  124 aattatctaccata----cttccgcagactctaactactaactacctcaagaatatttcttacgcggctaatgagattgagagccagcatgtttgagaaa 219  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41379670 aattatctaccatatatacttccgcagactctaactactaactacctcaagaatatttcttacgcggctaatgagattgagagccagcatgtttgagaaa 41379769  T
Q  220 atcaatacttttatctccgccagttacatacatagagagtttag 263  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  41379770 atcaatacttttatctccaccagttacatacatagagagtttag 41379813  T

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