View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_low_16 (Length: 283)
Name: NF10146_low_16
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 7152959 - 7152704
Alignment:
| Q |
18 |
aaaagaacatctagaagatcttcgttctcaacttcattgttgtcgtcttcttttgctctttctcgcttttcttgatgttgtctaataatgttttcaatga |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7152959 |
aaaagaacatctagaagatcttcgttatcaacttcattgttgtcgtcttcttttgctctttctcgcttttcttgatgttgtctaataatgttttcaatga |
7152860 |
T |
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| Q |
118 |
ttttgtctacacgcttgtgaattttctccaattttggtttcattccagatagtatatgtaacggtttaatcgaaggaaacaaatcatcgacaccaaatcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7152859 |
ttttgtctacacgcttgtgaattttctccaatttcggtttcattccagatagtatatgtaacggtttaatcgaaggaaacaaatcatcgacaccaaatcc |
7152760 |
T |
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| Q |
218 |
actcgacatttccacaacctttctaaccaaatcaacaaattcatcctggtcctttg |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7152759 |
actcgacatttccacaacctttctaaccaaatcaacaaattcatcctggtcctttg |
7152704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 7141128 - 7141001
Alignment:
| Q |
18 |
aaaagaacatctagaagatcttcgttctcaacttcattgttgtcgtcttcttttgctctttctcgcttttcttgatgttgtctaataatgttttcaatga |
117 |
Q |
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||||||||||| | ||||||||| ||||||| |||| | |||| |||| ||| ||||| ||| |||||||||||||| ||| | || || || | || |
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| T |
7141128 |
aaaagaacatccacaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttgatgttttctcacaacattatccaaga |
7141029 |
T |
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| Q |
118 |
ttttgtctacacgcttgtgaattttctc |
145 |
Q |
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|||||||||| | |||||||||||||| |
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| T |
7141028 |
ttttgtctacccttttgtgaattttctc |
7141001 |
T |
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