View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_low_17 (Length: 282)
Name: NF10146_low_17
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 39088802 - 39088535
Alignment:
| Q |
15 |
caccattccaattatcgagatcataagcggtaaagtgtttacatgaagcagccacctttaaccggctattgtcggttccctgtagtcctctcacataact |
114 |
Q |
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| T |
39088802 |
caccattccaattatcgagatcataagcggtaaagtgtttacatgaagcagccacctttaaccggctactgtctgttccctgtagtcctctcacataact |
39088703 |
T |
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| Q |
115 |
ggcagcgtatttacctgctagaattggatcctcaccgggagtctcctgtccacgaccccatcgtgggtcccgaaaaatgttcacatttggactccaatat |
214 |
Q |
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| T |
39088702 |
ggcagcgtatttacctgctagaattggatcctcaccgggagtctcctgtccacgaccccatcgtgggtcccgaaaaatgttcacatttggactccaatat |
39088603 |
T |
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| Q |
215 |
gtcaaccctgccgttcctccgttgtacattgcccttgcttcgtccgatgcaacctgcacattattacc |
282 |
Q |
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| T |
39088602 |
gtcaaccctgccgttcctccgttgtacattgcccttgcttcgtccgaagcaacctgcacattattacc |
39088535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 44718123 - 44718379
Alignment:
| Q |
15 |
caccattccaattatcgagatcataagcggtaaagtgtttacatgaagcagccacctttaaccggctattgtcggttccctgtagtcctctcacataact |
114 |
Q |
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| T |
44718123 |
caccattccaattatcaacatcataagctgtgaagtgtttgcaacaagcagctaccttcaacttgttaccgtctgttccctgtagccccttaacataact |
44718222 |
T |
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| Q |
115 |
ggcagcgtatttacctgctagaattggatcctcaccgggagtctcctgtccacgaccccatcgtgggtcccgaaaaatgttcacatttggactccaatat |
214 |
Q |
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| T |
44718223 |
agcggcatatctaccggctagtacagggtcttcaccgggagtttcctgtccacgaccccacctagggtctctgaaaatgttcacatttggactccaataa |
44718322 |
T |
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| Q |
215 |
gtcaaccctgccgttcctccgttgtacattgcccttgcttcgtccgatgcaacctgc |
271 |
Q |
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| T |
44718323 |
gttaaccctgctgctcctccattgtacattgcccttgcttcatccgagacaacctgc |
44718379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 13300547 - 13300399
Alignment:
| Q |
107 |
acataactggcagcgtatttacctgctagaattggatcctcaccgggagtctcctgtccacgaccccatcgtgggtcccgaaaaatgttcacatttggac |
206 |
Q |
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| T |
13300547 |
acataactggcggcatattttccggccacagtgggatcttcaccgggtgtctcttggccacggccccaccgtggatcacggaaaatattcacattaggac |
13300448 |
T |
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| Q |
207 |
tccaatatgtcaaccctgccgttcctccgttgtacattgcccttgcttc |
255 |
Q |
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| T |
13300447 |
tccaaaaagtcaaccctgcagctccaccattgtacattgctcttgcttc |
13300399 |
T |
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