View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_low_22 (Length: 251)
Name: NF10146_low_22
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 38637716 - 38637513
Alignment:
| Q |
18 |
aacaccaccagcatatatgagcatcatcgtcttgaaagaagccgtaagatatcccgttccaaatgcaaccacagcaaatgcaagcaacattatctgcatt |
117 |
Q |
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| T |
38637716 |
aacaccaccagcatatatgagcatcatcgtcttgaaagaagccataagatatcccgttccaaatgcaaccacagcaaatgcaagcaacattatctgcatt |
38637617 |
T |
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| Q |
118 |
agcttctctgctaggttttgcccttgccaatccatctgatgaagaaaaaagttaaggaagaaaattgagcaacacttagcagcaataacaataagttaat |
217 |
Q |
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| T |
38637616 |
agcttctctgctaggttttgcccttgccaatccatctgatgaagaaaaaagttaaggaagaaaattgagcaacacttagcagcaataacaataagttaat |
38637517 |
T |
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| Q |
218 |
aaca |
221 |
Q |
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|||| |
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| T |
38637516 |
aaca |
38637513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 34569849 - 34569985
Alignment:
| Q |
18 |
aacaccaccagcatatatgagcatcatcgtcttgaaagaagccgtaagatatcccgttccaaatgcaaccacagcaaatgcaagcaacattatctgcatt |
117 |
Q |
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||||||||||||||||||||| ||||| || | |||||||||||| | |||||| | |||||| |||| |||||||||||| |||| || ||||||||| |
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| T |
34569849 |
aacaccaccagcatatatgaggatcattgtttggaaagaagccgtgatatatccagctccaaacgcaatcacagcaaatgctagcagcagtatctgcatc |
34569948 |
T |
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| Q |
118 |
agcttctctgctaggttttgcccttgccaatccatct |
154 |
Q |
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| T |
34569949 |
agttgctctgctagcttttgaccttcccaatccatct |
34569985 |
T |
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