View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10146_low_23 (Length: 250)

Name: NF10146_low_23
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10146_low_23
NF10146_low_23
[»] chr5 (4 HSPs)
chr5 (1-242)||(10813991-10814241)
chr5 (186-231)||(12317309-12317354)
chr5 (187-231)||(15931053-15931097)
chr5 (184-240)||(23270672-23270728)
[»] chr7 (3 HSPs)
chr7 (192-242)||(1469115-1469165)
chr7 (187-234)||(28646967-28647014)
chr7 (187-231)||(27312150-27312194)
[»] chr2 (1 HSPs)
chr2 (192-242)||(18691981-18692031)
[»] chr6 (1 HSPs)
chr6 (192-234)||(8479311-8479353)
[»] chr1 (3 HSPs)
chr1 (192-234)||(16899510-16899552)
chr1 (187-231)||(15059561-15059605)
chr1 (187-231)||(46607804-46607848)
[»] chr3 (3 HSPs)
chr3 (186-231)||(48977381-48977426)
chr3 (187-231)||(21362937-21362981)
chr3 (187-231)||(40133608-40133652)
[»] scaffold0240 (1 HSPs)
scaffold0240 (187-231)||(12913-12957)
[»] scaffold0160 (1 HSPs)
scaffold0160 (190-242)||(29290-29342)
[»] scaffold0068 (1 HSPs)
scaffold0068 (187-231)||(41803-41847)
[»] chr8 (2 HSPs)
chr8 (187-231)||(28193472-28193516)
chr8 (187-231)||(42643277-42643321)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10814241 - 10813991
Alignment:
Q  1 tcaatattgcaaaatgaatctaaaacacgaaattagatcatcatggaacatccaatcttttgtnnnnnnnnnnnnnnnnnntggatcatccaatcttaat 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                  | |||||||||||||||||    
T  10814241 tcaatattgcagaatgaatctaaaacacgaaattagatcatcatggaacatccaatcttttgtaaaaaaaaataaaaaa--tagatcatccaatcttaat 10814144  T
Q  101 cacattgtgagaatttactataacatta-----------agcaagcacaatcatcaaatctcaatcaaatgattcatattctaagtttctaactatcaac 189  Q
    ||||||||| ||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  10814143 cacattgtgggaatttactataacattattgtgtcgctaagcaagcacaatcatcaaatctcaatcaaatgattcatattctaaatttctaactataaac 10814044  T
Q  190 ctatttggggttggcctagtggttaacttggaattttggagtgtgttcatctc 242  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  10814043 ctatttggggttggcttagtggttaacttagaattttggagtgtgctcatctc 10813991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 12317354 - 12317309
Alignment:
Q  186 caacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    ||||| ||||||||||||||||||||||  |||||||| |||||||    
T  12317354 caacccatttggggttggcctagtggttggcttggaatcttggagt 12317309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 15931053 - 15931097
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    |||| ||||||||||||||||||||||| ||||| || |||||||    
T  15931053 aacccatttggggttggcctagtggttagcttgggatcttggagt 15931097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 23270728 - 23270672
Alignment:
Q  184 atcaacctatttggggttggcctagtggttaacttggaattttggagtgtgttcatc 240  Q
    ||||||| ||||||||||||||||||||||  ||||| || ||||||| || |||||    
T  23270728 atcaacccatttggggttggcctagtggttggcttgggatcttggagtttgctcatc 23270672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 1469115 - 1469165
Alignment:
Q  192 atttggggttggcctagtggttaacttggaattttggagtgtgttcatctc 242  Q
    |||||||||||||||||||||| ||||| ||| ||||||| ||||||||||    
T  1469115 atttggggttggcctagtggttgacttgaaatcttggagtttgttcatctc 1469165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 28646967 - 28647014
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagtgtg 234  Q
    |||||||||||||||||||||||| || |||||| || ||||||||||    
T  28646967 aacctatttggggttggcctagtgattgacttgggatcttggagtgtg 28647014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 27312150 - 27312194
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    |||||||||||||||||||||||||||  ||||| || |||||||    
T  27312150 aacctatttggggttggcctagtggttggcttgggatcttggagt 27312194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 18691981 - 18692031
Alignment:
Q  192 atttggggttggcctagtggttaacttggaattttggagtgtgttcatctc 242  Q
    |||||||||||||||| |||||  ||||||||||||||||||| |||||||    
T  18691981 atttggggttggcctaatggtttgcttggaattttggagtgtgctcatctc 18692031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 8479311 - 8479353
Alignment:
Q  192 atttggggttggcctagtggttaacttggaattttggagtgtg 234  Q
    |||||||||||||||||||||| |||||| || ||||||||||    
T  8479311 atttggggttggcctagtggttgacttgggatcttggagtgtg 8479353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 16899510 - 16899552
Alignment:
Q  192 atttggggttggcctagtggttaacttggaattttggagtgtg 234  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||    
T  16899510 atttggggttggcctagtggttgacttgtaatcttggagtgtg 16899552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 15059605 - 15059561
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    |||| ||||||||||||||||||||||  |||||||| |||||||    
T  15059605 aacccatttggggttggcctagtggttggcttggaatcttggagt 15059561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 46607804 - 46607848
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    |||| |||||||||||||||||||||| |||||| || |||||||    
T  46607804 aacccatttggggttggcctagtggttgacttgggatcttggagt 46607848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 48977381 - 48977426
Alignment:
Q  186 caacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    ||||| |||||||||||||||||||||| |||||| || |||||||    
T  48977381 caacccatttggggttggcctagtggttgacttgggatcttggagt 48977426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 21362937 - 21362981
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    |||| |||||||||||||||||||||| |||||| || |||||||    
T  21362937 aacccatttggggttggcctagtggttgacttgggatcttggagt 21362981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 40133652 - 40133608
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    |||| ||||||||||||||||||||||  ||||| ||||||||||    
T  40133652 aacccatttggggttggcctagtggttggcttgggattttggagt 40133608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 12957 - 12913
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    |||||||||||| |||||||||||||| |||||| || |||||||    
T  12957 aacctatttgggattggcctagtggttgacttgggatcttggagt 12913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 29342 - 29290
Alignment:
Q  190 ctatttggggttggcctagtggttaacttggaattttggagtgtgttcatctc 242  Q
    ||||||||| ||||||||||||||  |||||||| ||| ||||||||| ||||    
T  29342 ctatttgggattggcctagtggttggcttggaatcttgaagtgtgttcctctc 29290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 41847 - 41803
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    |||| |||||||||||||||||||||| |||||| || |||||||    
T  41847 aacccatttggggttggcctagtggttgacttgggatcttggagt 41803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 28193472 - 28193516
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    |||||||||||||||||||||||||||  ||||| || |||||||    
T  28193472 aacctatttggggttggcctagtggttggcttgggatcttggagt 28193516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 42643321 - 42643277
Alignment:
Q  187 aacctatttggggttggcctagtggttaacttggaattttggagt 231  Q
    |||| |||||||||||||||||||||| |||||| || |||||||    
T  42643321 aacccatttggggttggcctagtggttgacttgggatcttggagt 42643277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University