View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10146_low_25 (Length: 246)
Name: NF10146_low_25
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_25 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 1758256 - 1758038
Alignment:
| Q |
11 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1758256 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
1758157 |
T |
|
| Q |
111 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1758156 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatc |
1758057 |
T |
|
| Q |
211 |
atggattgtttctgtttgt |
229 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1758056 |
atggattgtttctgtttgt |
1758038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 29568361 - 29568588
Alignment:
| Q |
11 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29568361 |
cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt |
29568460 |
T |
|
| Q |
111 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagag---------tgatgatgaagcattgatgatgtt |
201 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
29568461 |
cttggatgatagttggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatgatgatgatgaagcattgatgatgtt |
29568560 |
T |
|
| Q |
202 |
ggaataatcatggattgtttctgtttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
29568561 |
ggaataatcatggattgtttctgtttgt |
29568588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 29168363 - 29168142
Alignment:
| Q |
11 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29168363 |
cagagacacagcagctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgctt |
29168264 |
T |
|
| Q |
111 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagag---tgatgatgaagcattgatgatgttggaata |
207 |
Q |
| |
|
||| |||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
29168263 |
attggatgatagttggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgttggaata |
29168164 |
T |
|
| Q |
208 |
atcatggattgtttctgtttgt |
229 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
29168163 |
atcatgctttgtttctgtttgt |
29168142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 29425404 - 29425232
Alignment:
| Q |
11 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
29425404 |
cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
29425305 |
T |
|
| Q |
111 |
cttgagtgatggttggtgagcagatgatgatgat---ggtgaacagcgtttgacagagtttttgtgagagtga |
180 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||| |
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|
| T |
29425304 |
cttggatgatggttggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 29569708 - 29569866
Alignment:
| Q |
27 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttgg |
126 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
29569708 |
aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg |
29569807 |
T |
|
| Q |
127 |
tgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatg |
185 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
29569808 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
29569866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 27918742 - 27918583
Alignment:
| Q |
27 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttgg |
126 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||| |
|
|
| T |
27918742 |
aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg |
27918643 |
T |
|
| Q |
127 |
tgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatga |
186 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
27918642 |
tgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 29569859 - 29569896
Alignment:
| Q |
192 |
tgatgatgttggaataatcatggattgtttctgtttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29569859 |
tgatgatgttggaataatcatggattgtttgtgtttgt |
29569896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 27521322 - 27521545
Alignment:
| Q |
6 |
aggagcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27521322 |
aggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa |
27521421 |
T |
|
| Q |
106 |
tgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaa |
205 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27521422 |
tgcttcttggatgatggttggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaa |
27521521 |
T |
|
| Q |
206 |
taatcatggattgtttctgtttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27521522 |
taatcatggattgtttctgtttgt |
27521545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 27462108 - 27461890
Alignment:
| Q |
11 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
110 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27462108 |
cagagacacagcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
27462009 |
T |
|
| Q |
111 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatc |
210 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27462008 |
cttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgttggaataatc |
27461909 |
T |
|
| Q |
211 |
atggattgtttctgtttgt |
229 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27461908 |
atggattgtttctgtttgt |
27461890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 27482247 - 27482029
Alignment:
| Q |
11 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482247 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
27482148 |
T |
|
| Q |
111 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatc |
210 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
27482147 |
cttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgttggaataatc |
27482048 |
T |
|
| Q |
211 |
atggattgtttctgtttgt |
229 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27482047 |
atggattgtttctgtttgt |
27482029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 18986208 - 18985990
Alignment:
| Q |
11 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
110 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18986208 |
cagagacacagcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
18986109 |
T |
|
| Q |
111 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatc |
210 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18986108 |
cttggatgacggttggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgttggaataatc |
18986009 |
T |
|
| Q |
211 |
atggattgtttctgtttgt |
229 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18986008 |
atggattgtttctgtttgt |
18985990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 25518588 - 25518371
Alignment:
| Q |
15 |
gacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttg |
114 |
Q |
| |
|
|||||||| || ||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25518588 |
gacacagcagcgaagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttg |
25518489 |
T |
|
| Q |
115 |
agtgatggttggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatg---aagcattgatgatgttggaataatca |
211 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25518488 |
gatgatggttggtgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgttggaataatca |
25518389 |
T |
|
| Q |
212 |
tggattgtttctgtttgt |
229 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25518388 |
tggattgtttctgtttgt |
25518371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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