View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_low_27 (Length: 240)
Name: NF10146_low_27
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17456622 - 17456396
Alignment:
| Q |
1 |
tatcatagtaaaagatgatatatcaagaaaaaataagataagggatccatttattaat----atgttttttgacaaatgaaatattacaaatcccatatc |
96 |
Q |
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| T |
17456622 |
tatcatagtaaaagatgatatatcaagaaaaaataagataagggatccatttattaattaatatgttttttgacaaatgaaatattacaaatcccatatc |
17456523 |
T |
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| Q |
97 |
acatcaagaaatattagcatcaagttattggtttctccctccaaatagcccttctttcccaatggatatggtctattgtatggaaaaatccatcactctt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17456522 |
acatcaagaaatattagcatcaagttattggtttctccctccaaatagcccttctttcccaatggatatggtctattgtatggaaaaatccatcactctt |
17456423 |
T |
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| Q |
197 |
tattatccaaaaatcgggtttaatagg |
223 |
Q |
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||||||||||||||||||||||||||| |
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| T |
17456422 |
tattatccaaaaatcgggtttaatagg |
17456396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 15200919 - 15200796
Alignment:
| Q |
92 |
atatcacatcaagaaatattagcatcaagttattggtttctccctccaaatagcccttctttcccaatggatatggtctattgtatggaaaaatccatca |
191 |
Q |
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|||| |||| |||||||||||||||||| |||||||||| | |||||||||||||||||| ||||| ||||||||||| | |||||||||||| |||||| |
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| T |
15200919 |
atattacatgaagaaatattagcatcaaattattggtttattcctccaaatagcccttctatcccagtggatatggtcaactgtatggaaaaaaccatca |
15200820 |
T |
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| Q |
192 |
ctctttattatccaaaaatcgggt |
215 |
Q |
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||||||||||||||||||||||| |
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| T |
15200819 |
atctttattatccaaaaatcgggt |
15200796 |
T |
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