View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_low_28 (Length: 240)
Name: NF10146_low_28
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_28 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 1224946 - 1224719
Alignment:
| Q |
17 |
acttaggaccagctccattagaagatatggctaggtatgttattgtacattagttttatctctagttttgtttcctctcctctaatttacacttatccat |
116 |
Q |
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| T |
1224946 |
acttaggaccagctccattagaagatatggctaggtatgttattgtacattagttttatctttagttttgtttcctctcctctaatttacacttatccat |
1224847 |
T |
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| Q |
117 |
----tcaggcaaatagctactgcttgtggcccttgtggaaacaatagagactacattttccatctagaaaaggctatgtatgatattggtaagctcttta |
212 |
Q |
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| T |
1224846 |
ccattcaggcaaatagctactgcttgtggcccttgtggaaacaatagagactacattttccttctagaaaaggctatgtatgatattggtaagttcttta |
1224747 |
T |
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| Q |
213 |
tcttgtagcatttagagtctgtttggat |
240 |
Q |
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| T |
1224746 |
tcttgtagcatttagagcctgtttggat |
1224719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 1201044 - 1201161
Alignment:
| Q |
123 |
aaatagctactgcttgtggcccttgtggaaacaatagagactacattttccatctagaaaaggctatgtatgatattggtaagctctttatcttgtagca |
222 |
Q |
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|||||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| || |
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| T |
1201044 |
aaatagctactgcttgtggcccttgtggaaacaacagggactgcattttccttctagaaaaggctatgtatgatattggtaagttctttattttgtaaca |
1201143 |
T |
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| Q |
223 |
tttagagtctgtttggat |
240 |
Q |
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| T |
1201144 |
tttagagcctgtttggat |
1201161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 1200961 - 1201045
Alignment:
| Q |
17 |
acttaggaccagctccattagaagatatggctaggtatgttattgtacattagttttatctctagttttgtttcctctcctctaa |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | || ||||| |||||||| |||||||| |
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| T |
1200961 |
acttaggaccagctccattagaagatatggctaggtatgatattgtaacttagtttcacctttagttctgtttcctttcctctaa |
1201045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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