View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_low_3 (Length: 568)
Name: NF10146_low_3
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 5 - 555
Target Start/End: Original strand, 45776529 - 45777079
Alignment:
| Q |
5 |
gagaagcataggaagctgctaaatgcttttatcaggcaaaatcctggcttgcttgagaagtcttttgcccttatgttgaagattccaagattcattgatt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45776529 |
gagaagcataggaagctgctaaatgcttttatcaggcaaaatcctggcttgcttgagaagtcttttgcccttatgttgaagattccaagattcattgatt |
45776628 |
T |
|
| Q |
105 |
ttgataacaagcgttcctacttccgatcaaaaatcaagcatcagcatgaccatcaccacagcccactaagaatatcagtaagaagggcgtatgttttaga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45776629 |
ttgataacaagcgttcctacttccgatcaaaaatcaagcatcagcatgaccatcaccacagcccactaagaatatcagtaagaagggcgtatgttttaga |
45776728 |
T |
|
| Q |
205 |
agattcctacaaccagcttcgaatgagatcaactcaagatttgaagggaaggttgactgttcacttccaaggggaggaaggtattgatgctggtggactt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45776729 |
agattcctacaaccagcttcgaatgagatcaactcaagatttgaagggaaggttgactgttcacttccaaggggaggaaggtattgatgctggtggactt |
45776828 |
T |
|
| Q |
305 |
acaagggagtggtatcaattgttgtccagggttatttttgacaaaggagcgctgctttttactaccgtgggcaatgagtcaacatttcagccgaacccga |
404 |
Q |
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| T |
45776829 |
acaagggagtggtatcaattgttgtccagggttatttttgacaaaggagcgctgctttttactaccgtgggcaatgagtcaacatttcagccgaacccga |
45776928 |
T |
|
| Q |
405 |
actctgtctaccaaacagaacatctatcttatttcaaatttgttggcagagtggtgagttcatttgcaccnnnnnnnattgtatgctgcatgtcgtatat |
504 |
Q |
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| T |
45776929 |
actctgtctaccaaacagaacatctatcttatttcaaatttgttggcagagtggtgagttcatttgcacctttttttattgtatgctgcatgtcgtatat |
45777028 |
T |
|
| Q |
505 |
atgcttcttatcccatctatcttatccaggttggaaaagcattatttgatg |
555 |
Q |
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| T |
45777029 |
atgcttcttatcccatctatcttatccaggttggaaaagcattatttgatg |
45777079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 463
Target Start/End: Complemental strand, 28159563 - 28159105
Alignment:
| Q |
5 |
gagaagcataggaagctgctaaatgcttttatcaggcaaaatcctggcttgcttgagaagtcttttgcccttatgttgaagattccaagattcattgatt |
104 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||| || || || ||| ||||| |||||||||| || |||| |
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| T |
28159563 |
gagaaacataggaagcttctaaatgcttttataaggcaaaatcctggtttgcttgagaaatccttcttactcatgctgaaggttccaagatttatcgatt |
28159464 |
T |
|
| Q |
105 |
ttgataacaagcgttcctacttccgatcaaaaatcaagcatcagcatgaccatcaccacagcccactaagaatatcagtaagaagggcgtatgttttaga |
204 |
Q |
| |
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||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| || |||||||| |||||| |||| |
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|
| T |
28159463 |
ttgataacaagcgcgctcacttccgatcaaaaattaagcatcagcatgaccatcaccatagcccgttaagaatatctgtcagaagggcatatgttctaga |
28159364 |
T |
|
| Q |
205 |
agattcctacaaccagcttcgaatgagatcaactcaagatttgaagggaaggttgactgttcacttccaaggggaggaaggtattgatgctggtggactt |
304 |
Q |
| |
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|||||| || ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||| |
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|
| T |
28159363 |
agattcttataaccaacttcgcatgagaccaactcaagatttgaagggaaggttgactgttcactttcaaggggaggaaggtatcgatgcaggaggactt |
28159264 |
T |
|
| Q |
305 |
acaagggagtggtatcaattgttgtccagggttatttttgacaaaggagcgctgctttttactaccgtgggcaatgagtcaacatttcagccgaacccga |
404 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||||| | |
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| T |
28159263 |
acaagggagtggtatcaattgttgtccagagttatttttgacaagggagcactgctttttactacagtgggcaacgagtcaacatttcaaccaaacccta |
28159164 |
T |
|
| Q |
405 |
actctgtctaccaaacagaacatctatcttatttcaaatttgttggcagagtggtgagt |
463 |
Q |
| |
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||||||| || |||||||||||| ||||||||||||| ||| |||| |||||||||||| |
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|
| T |
28159163 |
actctgtttatcaaacagaacatttatcttatttcaagtttattggtagagtggtgagt |
28159105 |
T |
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