View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10146_low_30 (Length: 239)

Name: NF10146_low_30
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10146_low_30
NF10146_low_30
[»] chr6 (7 HSPs)
chr6 (1-223)||(6934854-6935076)
chr6 (12-215)||(6947460-6947667)
chr6 (92-223)||(6921062-6921193)
chr6 (45-223)||(6954181-6954362)
chr6 (131-223)||(6942718-6942810)
chr6 (93-156)||(20770919-20770982)
chr6 (109-174)||(17369931-17369996)
[»] chr7 (6 HSPs)
chr7 (16-211)||(1985588-1985786)
chr7 (93-166)||(14076928-14077001)
chr7 (93-166)||(14386956-14387029)
chr7 (114-176)||(15571632-15571694)
chr7 (141-175)||(13416672-13416706)
chr7 (94-166)||(22064356-22064428)
[»] scaffold0354 (1 HSPs)
scaffold0354 (45-185)||(7725-7861)
[»] chr4 (1 HSPs)
chr4 (87-166)||(53775101-53775180)
[»] chr2 (2 HSPs)
chr2 (106-166)||(18913265-18913325)
chr2 (106-166)||(18908517-18908577)
[»] chr5 (1 HSPs)
chr5 (105-174)||(18964561-18964630)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6934854 - 6935076
Alignment:
Q  1 gcaagacaaaacaaataaacttgagggcaaactgattatcaaataaaaccatgatttgaaaataatcacacaatatattgtacaccataaactaacacaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6934854 gcaagacaaaacaaataaacttgagggaaaactgattatcaaataaaaccatgatttgaaaataatcacacaatatattgtacaccataaactaacacaa 6934953  T
Q  101 attcaaacaagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacatatcccttggcactgaaccacaaatttttaccgtta 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6934954 attcaaacaagtaaatcattgaagagaaaattaccttcaagaagtcgataccaaactttcaacatatcccttggcactgaaccacaaatttttaccgtta 6935053  T
Q  201 cttttaattctctttgctgtatt 223  Q
    |||||||||||||||||||||||    
T  6935054 cttttaattctctttgctgtatt 6935076  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 6947460 - 6947667
Alignment:
Q  12 caaataaacttgagggcaaactgattatcaaataaaaccatgatttgaaaataatcacacaatatattgtaca----ccataaactaacacaaattcaaa 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||| ||||| ||||    
T  6947460 caaataaacttgagggcaaaatgattatcaaataaaaccatgatttgaaaataatcacacaatatattgtacatcatacataaactaactcaaatacaaa 6947559  T
Q  108 caagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacatatcccttggcactgaaccacaaatttttaccgttacttttaa 207  Q
    ||||||||||||| |||||||| |||||||||| |  ||||| |||| |||||||||||||| |||||||||||||||||| ||||   | |||||||||    
T  6947560 caagtaaatcatccaagagaaacttaccttcaaaatatcgatgccaagctttcaacatatccattggcactgaaccacaaaattttgttggtacttttaa 6947659  T
Q  208 ttctcttt 215  Q
    ||||||||    
T  6947660 ttctcttt 6947667  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 6921062 - 6921193
Alignment:
Q  92 ctaacacaaattcaaacaagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacatatcccttggcactgaaccacaaattt 191  Q
    |||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||    
T  6921062 ctaacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtgaaccacaaaatt 6921161  T
Q  192 ttaccgttacttttaattctctttgctgtatt 223  Q
    |||  | |||||| |||| |||||||| ||||    
T  6921162 ttattggtactttcaattatctttgctctatt 6921193  T

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Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 6954181 - 6954362
Alignment:
Q  45 aaaaccatgatttgaaaataatcacacaatatattgtacaccataaac----taacacaaattcaaacaagtaaatcatcgaagagaaaat-taccttca 139  Q
    ||||||||| | |||||||||||||| |||| |||||||  |||| ||    ||||||||||||||||||||||||||||| | | ||||  ||| ||||    
T  6954181 aaaaccatggtatgaaaataatcacaaaatacattgtac--catagacaagctaacacaaattcaaacaagtaaatcatcggaaaaaaaacatactttca 6954278  T
Q  140 agaagtcgataccaaactttcaacatatcccttggcactgaaccacaaatttttaccgttacttttaattctctttgctgtatt 223  Q
    ||||||||||||||| |||||||||||||||||||||  | ||||| || |||||  | |||||||||||||| ||||| ||||    
T  6954279 agaagtcgataccaagctttcaacatatcccttggcagcggaccaccaaattttattggtacttttaattctcgttgctctatt 6954362  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 6942718 - 6942810
Alignment:
Q  131 ttaccttcaagaagtcgataccaaactttcaacatatcccttggcactgaaccacaaatttttaccgttacttttaattctctttgctgtatt 223  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||| || ||||| || |||||  | |||||||||||||||||||| ||||    
T  6942718 ttactttcaagaagttgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtacttttaattctctttgctctatt 6942810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 20770982 - 20770919
Alignment:
Q  93 taacacaaattcaaacaagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaac 156  Q
    |||||||||||||||||||||||||||||||||| || |||| ||||| | |||||||||||||    
T  20770982 taacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggtcgataccaaac 20770919  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 17369996 - 17369931
Alignment:
Q  109 aagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacatatcccttgg 174  Q
    |||||||||||||||||| || |||| ||||| |||| |||||||| ||||||||||| |||||||    
T  17369996 aagtaaatcatcgaagagtaacttactttcaacaagtagataccaagctttcaacatagcccttgg 17369931  T

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Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 1985588 - 1985786
Alignment:
Q  16 taaacttgagggcaaactgattatcaaataaaaccatgatttgaaaataatcacacaatatattgtacac---cataaactaacacaaattcaaacaagt 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||   || ||||||||||||||||||||||||    
T  1985588 taaacttgagggcaaaatgattatcaaataaaaccatgatttgaaaataatcacacaatatattgtatacatacacaaactaacacaaattcaaacaagt 1985687  T
Q  113 aaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacatatcccttggcactgaaccacaaatttttaccgttacttttaattct 211  Q
    ||||||||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| || ||  | |||||||||||||    
T  1985688 aaatcatcgaagagaaacttaccttcaagaaatcgataccaagctttcaacgtatcccttggcactgaaccacaaaattctattggtacttttaattct 1985786  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 14077001 - 14076928
Alignment:
Q  93 taacacaaattcaaacaagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacata 166  Q
    ||||||| ||||||||| |||||||||||||||| || |||| ||| | ||||||||||||| |||||||||||    
T  14077001 taacacagattcaaacatgtaaatcatcgaagaggaacttactttctaaaagtcgataccaagctttcaacata 14076928  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 14387029 - 14386956
Alignment:
Q  93 taacacaaattcaaacaagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacata 166  Q
    ||||||| ||||||||| |||||||||||||||| || |||| ||| | ||||||||||||| |||||||||||    
T  14387029 taacacagattcaaacatgtaaatcatcgaagaggaacttactttctaaaagtcgataccaagctttcaacata 14386956  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 15571632 - 15571694
Alignment:
Q  114 aatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacatatcccttggca 176  Q
    |||||||||| | ||| |||| |||| |||||||||||||| ||||||||||||||| |||||    
T  15571632 aatcatcgaacaaaaacttactttcaggaagtcgataccaagctttcaacatatcccctggca 15571694  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 13416672 - 13416706
Alignment:
Q  141 gaagtcgataccaaactttcaacatatcccttggc 175  Q
    |||||||||||||| ||||||||||||||||||||    
T  13416672 gaagtcgataccaagctttcaacatatcccttggc 13416706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 22064428 - 22064356
Alignment:
Q  94 aacacaaattcaaacaagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacata 166  Q
    |||||||||||||||||||||||| ||| | ||||| |||| ||||| ||  ||| ||||| |||||| ||||    
T  22064428 aacacaaattcaaacaagtaaatcgtcgtaaagaaacttactttcaacaatacgaaaccaacctttcatcata 22064356  T

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Target: scaffold0354 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 7861 - 7725
Alignment:
Q  45 aaaaccatgatttgaaaataatcacacaatatattgtacaccataaactaacacaaattcaaacaagtaaatcatcgaagagaaaattaccttcaagaag 144  Q
    |||||||| || ||||||||||||||||| | | |||||||   ||||||||| |||||||||||||||||| |||||  | || || ||||||||||||    
T  7861 aaaaccataatatgaaaataatcacacaagacaatgtacac---aaactaacaaaaattcaaacaagtaaatgatcgagcaaaacat-accttcaagaag 7766  T
Q  145 tcgataccaaactttcaacatatcccttggcactgaaccac 185  Q
    ||| |||||| ||||| ||||||||||||||| ||||||||    
T  7765 tcggtaccaagctttctacatatcccttggcattgaaccac 7725  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 53775180 - 53775101
Alignment:
Q  87 ataaactaacacaaattcaaacaagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacata 166  Q
    ||||| ||||||||||||||||||||||||| | |||||| || |||| ||||| | || |||||||| |||||||||||    
T  53775180 ataaattaacacaaattcaaacaagtaaatcttggaagaggaacttactttcaacacgttgataccaagctttcaacata 53775101  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 18913265 - 18913325
Alignment:
Q  106 aacaagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacata 166  Q
    ||||| |||||||| ||||||||| |||| ||||||| || |||||||| |||||||||||    
T  18913265 aacaattaaatcattgaagagaaacttactttcaagaggttgataccaagctttcaacata 18913325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 18908517 - 18908577
Alignment:
Q  106 aacaagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacata 166  Q
    ||||| |||||||||||||| ||| |||| ||||||| || || ||||| |||||||||||    
T  18908517 aacaattaaatcatcgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 18908577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 18964561 - 18964630
Alignment:
Q  105 aaacaagtaaatcatcgaagagaaaattaccttcaagaagtcgataccaaactttcaacatatcccttgg 174  Q
    |||||||||| ||||| ||||| || |||| ||||| |||| |||| ||| ||||||||||| |||||||    
T  18964561 aaacaagtaagtcatcaaagaggaacttactttcaacaagtagatatcaagctttcaacatagcccttgg 18964630  T

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