View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_low_5 (Length: 490)
Name: NF10146_low_5
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Complemental strand, 31549139 - 31548657
Alignment:
| Q |
8 |
agagaagaaattgcaggtaataaagacattctttttataaaaaggttgcatgctattggatataaaaaccactagtgttttt-gtaggatttagaaccgt |
106 |
Q |
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| T |
31549139 |
agagaagaaattgcaggtaatgacgacattcttttgacaaaaatgttgcatgctattggatataaaaaccacttgtgttttttgttggatatagaactgt |
31549040 |
T |
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| Q |
107 |
aacagcttaggatagctattcaacgtatccattataacgattatcatgttgttaattgcatatgtttcttgttaggtgactgatgtatctgtattcgaga |
206 |
Q |
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| T |
31549039 |
aacagcttaggattgtaattcaacgtattcattattacgattatcgtgttgttaattgcatatgtttcttgttaggtgactgatgtatctgtattcgaga |
31548940 |
T |
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| Q |
207 |
caaggacagaatttgaagggcaacaaaaacttgtcgacgagttgcaaagacgcttagaagattcagaatataaacttatagaaggggagaggctgcggaa |
306 |
Q |
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| T |
31548939 |
caaggacagaatttgaagggcaacaaaaacttgtcgacgagttgcaaagacgcttagaagattcagaatataaacttatagaaggggagaggctgcggaa |
31548840 |
T |
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| Q |
307 |
aaaattacacaataccattttggtaattcattgaaccaaaagatttgttgattataagnnnnnnntcagacaccttattaatcaatctcagttttaacag |
406 |
Q |
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| T |
31548839 |
aaaattacacaataccattttggtaattcattgaaccaaaagatttgttgattataag-aaaatatcagacaccttattaatcaatctcagttttaacag |
31548741 |
T |
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| Q |
407 |
gagttaaaagggaacatccgtgtattctgtcgcgtgaggcctttgttgccggatgaaagtcgtagcacagaaggcaagatattc |
490 |
Q |
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| T |
31548740 |
gagttaaaagggaacatccgtgtattctgtcgcgtgaggcctttgttgccagatgaaaatcgtagcacagaaggcaagatattc |
31548657 |
T |
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Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 203 - 332
Target Start/End: Original strand, 34650237 - 34650366
Alignment:
| Q |
203 |
gagacaaggacagaatttgaagggcaacaaaaacttgtcgacgagttgcaaagacgcttagaagattcagaatataaacttatagaaggggagaggctgc |
302 |
Q |
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| T |
34650237 |
gagacaagaacagaattcgaaggacaacaaaaactcgtaaatgagttacaaaaacgattggcagatgcagaatacaaacttatagaaggggagaagctga |
34650336 |
T |
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| Q |
303 |
ggaaaaaattacacaataccattttggtaa |
332 |
Q |
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| T |
34650337 |
ggaaagaattacataatacaattttggtaa |
34650366 |
T |
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