View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_low_6 (Length: 446)
Name: NF10146_low_6
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 172 - 435
Target Start/End: Original strand, 22301843 - 22302109
Alignment:
| Q |
172 |
actagccaatctatattgattggatttgtcgattttcagcggtgaaagtgnnnnnnnn---cttctttcaaacaatcaaagattttggactaaaatattg |
268 |
Q |
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| T |
22301843 |
actagtcaatctatattgattggatttgtcgattttcaacggtgaaagtgtatttttttttcttcttttaaacaaccaaagattttgaattaaaatattg |
22301942 |
T |
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| Q |
269 |
acgatcgtctttattctaaaattagagtatatatattatattttgaaaacattttccaaaaataaggatctgaatcaatgcctcattttataaattattt |
368 |
Q |
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| T |
22301943 |
acgatcgtctttattctaaaattagagtatatatattatgttttgaaagcattttccaaaaataaggatctgaatcaatgcctcattttataaattactt |
22302042 |
T |
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| Q |
369 |
tccgataatgagttttctaatcaaatcatacactttgtaaaacatgaaacaatgtacaagcattcat |
435 |
Q |
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| T |
22302043 |
tcctataatgagttttctaatcaaatcatacactttgtaaaacatgaaacaatgtacaagcattcat |
22302109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 412
Target Start/End: Complemental strand, 30470281 - 30470249
Alignment:
| Q |
380 |
gttttctaatcaaatcatacactttgtaaaaca |
412 |
Q |
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| T |
30470281 |
gttttcaaatcaaatcatacactttgtaaaaca |
30470249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 18513173 - 18513252
Alignment:
| Q |
345 |
aatgcctcattttataaattattttccgataatgagttttctaatcaaatcatacactttgtaaaacatgaaacaatgta |
424 |
Q |
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| T |
18513173 |
aatgccacattttataagtcattttccaacactgatttttcaaatcaaatcattttctttgtaaaacatgaaacgatgta |
18513252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 12738440 - 12738486
Alignment:
| Q |
153 |
ttatgttggagttagcccaactagccaatctatattgattggatttg |
199 |
Q |
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| T |
12738440 |
ttatgttggagtaagccctaatagccaatctatattgattgggtttg |
12738486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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