View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_low_7 (Length: 408)
Name: NF10146_low_7
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_7 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 167 - 408
Target Start/End: Original strand, 1224144 - 1224385
Alignment:
| Q |
167 |
gaaactgaggtacaaaatcttgtccgatgatgtgcctaggtgtagcagtcaattggcttgtcatgcatatgcgcaacaaatgaaatggcattcaattgct |
266 |
Q |
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| T |
1224144 |
gaaactgaggtacaaaatattgtccgatgatgtgcctaggtgtagcagtcagctggcttgtcatgcgtatgcacaacgaatgaaatggcattcaattgct |
1224243 |
T |
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| Q |
267 |
catggaaaagttcattgtgtgatctttggattacacatctgttgttgcagtgttaatggaggatgttgagtaaagccttaagtcttccaaacaacttctt |
366 |
Q |
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| T |
1224244 |
catggaaaaggtcattgtgtgatctttggattacacatctgtttttgcagttttaatggaggatgttgagtaaagccttaagtcttccaaacaacttctt |
1224343 |
T |
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| Q |
367 |
gtcattaggatgtacatttcccgaaactgaaagtaccttcct |
408 |
Q |
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| T |
1224344 |
gtcattaggatgtacatttcccgaaactgaaagtaccttcct |
1224385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 1224008 - 1224157
Alignment:
| Q |
1 |
aagagaaatacatgcatttcaccgttctatttacaaaataattagaaatgattttgatcaagcacattacaagttagtttcattttaacatctcccttaa |
100 |
Q |
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| T |
1224008 |
aagagaaatacatgtatttcactgttctatttacaaaataattagaaatgattttgatcaagcacattacaagttagtttcattttaacatctcccttaa |
1224107 |
T |
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| Q |
101 |
actcaaatagttgttgatgcaactgttttgagttcagaaactgaggtaca |
150 |
Q |
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| T |
1224108 |
actcaaatagttgttgatgcaactgttttgagttcggaaactgaggtaca |
1224157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 1201770 - 1201676
Alignment:
| Q |
55 |
tgatcaagcacattacaagttagtttcattttaacatctcccttaaactcaaatagttgttgatgcaactgttttgagttcagaaactgaggtac |
149 |
Q |
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| T |
1201770 |
tgatcaagcacattacaagttaatttcattttaacatctcccttaaactcaaatagttgtagatgcaactgttttgagttcgaaaactgaggtac |
1201676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 1201687 - 1201562
Alignment:
| Q |
168 |
aaactgaggtacaaaatcttgtccgatgatgtgcctaggtgtagcagtcaattggcttgtcatgcatatgcgcaacaaatgaaatggcattcaattgctc |
267 |
Q |
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| T |
1201687 |
aaactgaggtacgaaatcttgtccgatgatgtgctttggtgcagcagtcagctggcttgtcattcgtatgtgcaacaaatgaaacagtattcaatttctc |
1201588 |
T |
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| Q |
268 |
atggaaaagttcattgtgtgatcttt |
293 |
Q |
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| T |
1201587 |
atggaaaacgtcattctctgatcttt |
1201562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 1201563 - 1201506
Alignment:
| Q |
351 |
ttccaaacaacttcttgtcattaggatgtacatttcccgaaactgaaagtaccttcct |
408 |
Q |
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| T |
1201563 |
ttccaaccaacttcttgtcattaggatgtacatttcacaaaactgaaagtaccttcct |
1201506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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