View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_low_9 (Length: 378)
Name: NF10146_low_9
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 37063172 - 37062823
Alignment:
| Q |
13 |
taggcgtgaaataaaggttaaccccaactcaccacctttgcataaggatacnnnnnnnntaatacacataattaatttttaattaacacacttaattgaa |
112 |
Q |
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| T |
37063172 |
taggcgtgaaataaaggttaaccccaactcaccatctttgcataaggatacaaaaaaaataatacacataattaatttttaattaaaacacttaattgaa |
37063073 |
T |
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| Q |
113 |
catgtgtaattataaaatgggttttagtcatttagtttggtggtgtgacatagaagctaaagggtggaagtacctaaaaagtgcttaaaaggttgaaact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37063072 |
catgtgtaattataaaatgggttttagtcatttagtttggtggtgtgacatagaagctaaagggtggaagtacctaaaaagtgcttaaaaggttgaaact |
37062973 |
T |
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| Q |
213 |
acaaatcaaagaagaaaataagcaggtagaagtaggggggttgggatattagattaggagttaggagtgagaagtggtgatgcagttatgtgttatttat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37062972 |
acaaatcaaagaagaaaataagcaggtagaagtaggggggttgggatattagattaggagttaggagtgagaagtggtgatgcagttatgtgttatttat |
37062873 |
T |
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| Q |
313 |
ttaaggagcaaaggcataaagccaaattaatatctatacaattaaccaat |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37062872 |
ttaaggagcaaaggcataaagccaaattaatatctatacaattaaccaat |
37062823 |
T |
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