View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10147_high_1 (Length: 397)
Name: NF10147_high_1
Description: NF10147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10147_high_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 24812521 - 24812140
Alignment:
| Q |
16 |
aaacaaacttctagtttttgctatccacaatcagaacactgttttctaacagataaagccttccatttggtataggtatggtaagattttttcatgtagc |
115 |
Q |
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| T |
24812521 |
aaacaaacttctagtttttgctatccacaatcagaacactgttttctaacagataaagccttccatttggtataggtatggtaagattttttcatgtagc |
24812422 |
T |
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| Q |
116 |
ctatttggaaaatgggcagtggtgtcatccgatccaagctttaaccgttttgtaatgcaaaatgaaggaaaattattcatgtcaagttatccaaaatctt |
215 |
Q |
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| T |
24812421 |
ctatttggaaaatgggcagtggtgtcatctgatccaagcttcaaccgttttgtaatgcaaaatgaaggcaaattattcatgtcaagttatccaaaatctt |
24812322 |
T |
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| Q |
216 |
ttagagatttggttggtaaaaatggtgtgattacagttcaaggagagcaacaaaggaaactacatggaatcgcgtccaatatgatgcgattagataagct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24812321 |
ttagagatttggttggtaaaaatggtgtgattacagttcaaggagagcaacaaaggaaactacatggaatcgcgtccaatatgatgcgattagataagct |
24812222 |
T |
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| Q |
316 |
taagttccatttcatgaatgatatacaaaatgtcatgatccaaactttgagcaatttcaaaaaccaacaagtaattcttctc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24812221 |
taagttccatttcatgaatgatatacaaaatgtcatgatccaaactttgagcaatttcaaaaaccaacaagtaattcttctc |
24812140 |
T |
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