View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10147_low_1 (Length: 614)
Name: NF10147_low_1
Description: NF10147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10147_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 41846007 - 41846611
Alignment:
| Q |
1 |
ttaaagagatcagttccattccatcgtcgagcaatgaataacactagtgctattaagctaagcaatcttcagtcgtggcaagtgaaggtgaaagtgaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846007 |
ttaaagagatcagttccattccatcgttgagcaatgaataacactagtgctattaagctaagcaatcttcagtcgtggcaagtgaaggtgaaagtgaatc |
41846106 |
T |
|
| Q |
101 |
gcgagattcatcataatcctctcttagaggagattgttccaccctaatatcctcgatcatcttaacaacatccaacattgttggccttttctcaggttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846107 |
gcgagattcatcataatcctctcttagaggagattgttccaccctaatatcctcgatcatcttaacaacatccaacattgttggccttttctcaggttgt |
41846206 |
T |
|
| Q |
201 |
aacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacctcaaaagttcttgatcaaacacctctgatgtccact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41846207 |
aacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacctcaaaagttcttgatcaaacacctctgatgtccact |
41846306 |
T |
|
| Q |
301 |
catccttcataacagaccgaacccattttggaagatcagcttcttgttcttcaaattccacgcaagagcgaactcctacgggagaagaatactgagagga |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
41846307 |
catccttcacaacagaccgaacccattttggaagatcagcttcttgttcttcaaattccacgcaagagcgaactcctactggagaagaatactgagagga |
41846406 |
T |
|
| Q |
401 |
aggagctcttcctgtcaaaatttccaacaccaatactccaaaagcatacacgtctgcctcttgtgaaagcttcttagcttccgcctgttctggagccctg |
500 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846407 |
aggagctcttcctgtcaaaacttccaacaccaatactccaaaagcatacacgtctgcctcttgtgaaagcttcttagcttccgcctgttctggagccctg |
41846506 |
T |
|
| Q |
501 |
tacccacccagccttgcaactgcgtgagcagggtttaataatagtgacaaaccaaagtcacctatgcaagcaaccccattcttgtcaagtatcacatttg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41846507 |
tacccacccagccttgcaactgcgtgagcagggtttaataacagtgacaaaccaaagtcacctatgcaagcaaccccattcttgtcaagtatcacatttg |
41846606 |
T |
|
| Q |
601 |
atgat |
605 |
Q |
| |
|
||||| |
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|
| T |
41846607 |
atgat |
41846611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 65 - 289
Target Start/End: Complemental strand, 26890927 - 26890703
Alignment:
| Q |
65 |
atcttcagtcgtggcaagtgaaggtgaaagtgaattgcgagattcatcataatcctctcttagaggagattgttccaccctaatatcctcgatcatctta |
164 |
Q |
| |
|
||||||||| |||| || ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||| ||||| || |||||||| ||||| ||| |
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|
| T |
26890927 |
atcttcagtggtgggaatggaaggtgaaagcgaattgcgtgattcgtcatagtcctcacacagaggagattgctccactctgatatcctcaatcatttta |
26890828 |
T |
|
| Q |
165 |
acaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacc |
264 |
Q |
| |
|
|||||||| | ||| |||||||| ||||| || || | | |||||||| | ||||||| ||||||||| |||||||| ||||||||||||||||| | |
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|
| T |
26890827 |
acaacatctaccatagttggcctcttctctggctgctgcaccacacaagccaacccaacatgcagcattgacacaagctcttcctcaatgttcttgtatc |
26890728 |
T |
|
| Q |
265 |
tcaaaagttcttgatcaaacacctc |
289 |
Q |
| |
|
|| ||||||||||||||| ||||| |
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|
| T |
26890727 |
gcagaagttcttgatcaaaaacctc |
26890703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 485 - 605
Target Start/End: Complemental strand, 26890507 - 26890387
Alignment:
| Q |
485 |
ctgttctggagccctgtacccacccagccttgcaactgcgtgagcagggtttaataatagtgacaaaccaaagtcacctatgcaagcaaccccattcttg |
584 |
Q |
| |
|
|||||| || || ||||||||||||| | |||| ||| ||| |||||||||| | ||||||||| ||||||||| |||||||||||| || |||||| |
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| T |
26890507 |
ctgttcaggtgctctgtacccacccaatcgtgcagttgcatgaacagggtttaacagtagtgacaacccaaagtcagatatgcaagcaacaccgttcttg |
26890408 |
T |
|
| Q |
585 |
tcaagtatcacatttgatgat |
605 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
26890407 |
tcaagtagtacattggatgat |
26890387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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