View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10148_high_11 (Length: 290)

Name: NF10148_high_11
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10148_high_11
NF10148_high_11
[»] chr5 (14 HSPs)
chr5 (22-140)||(5386273-5386390)
chr5 (185-243)||(2024295-2024353)
chr5 (174-243)||(2023321-2023390)
chr5 (185-243)||(4533133-4533190)
chr5 (182-243)||(5015127-5015187)
chr5 (195-243)||(12935900-12935948)
chr5 (195-243)||(12950057-12950105)
chr5 (195-234)||(4534071-4534110)
chr5 (183-243)||(28223663-28223723)
chr5 (196-243)||(29353608-29353655)
chr5 (197-243)||(183187-183233)
chr5 (195-243)||(12934727-12934775)
chr5 (195-243)||(38107150-38107198)
chr5 (183-243)||(38108080-38108140)
[»] chr8 (21 HSPs)
chr8 (182-243)||(23753256-23753317)
chr8 (185-243)||(45021647-45021705)
chr8 (179-240)||(39582001-39582062)
chr8 (185-243)||(14055453-14055510)
chr8 (185-243)||(26831442-26831500)
chr8 (185-243)||(39688342-39688400)
chr8 (185-234)||(14054118-14054167)
chr8 (183-240)||(44297816-44297873)
chr8 (185-240)||(44296720-44296775)
chr8 (185-243)||(22255574-22255632)
chr8 (187-233)||(35562246-35562292)
chr8 (185-243)||(45020585-45020643)
chr8 (185-243)||(45519490-45519548)
chr8 (185-232)||(28301344-28301391)
chr8 (185-232)||(28301659-28301706)
chr8 (185-243)||(6571326-6571384)
chr8 (185-243)||(26830325-26830383)
chr8 (195-233)||(41944365-41944403)
chr8 (195-243)||(26363594-26363642)
chr8 (195-243)||(30784275-30784323)
chr8 (185-233)||(36984146-36984194)
[»] chr7 (15 HSPs)
chr7 (175-240)||(7314252-7314317)
chr7 (195-243)||(16957261-16957309)
chr7 (176-243)||(17352881-17352948)
chr7 (185-243)||(42337069-42337127)
chr7 (182-243)||(42338150-42338211)
chr7 (185-243)||(35960202-35960260)
chr7 (185-243)||(40322552-40322610)
chr7 (185-243)||(46469141-46469199)
chr7 (183-240)||(7313069-7313126)
chr7 (196-240)||(47507771-47507815)
chr7 (185-243)||(12384093-12384151)
chr7 (185-243)||(35959081-35959139)
chr7 (185-239)||(40319551-40319605)
chr7 (195-243)||(37628549-37628597)
chr7 (196-232)||(40659015-40659051)
[»] chr3 (17 HSPs)
chr3 (185-243)||(52985130-52985188)
chr3 (195-243)||(40630625-40630673)
chr3 (185-243)||(37087113-37087171)
chr3 (185-243)||(45580108-45580166)
chr3 (185-243)||(45583256-45583314)
chr3 (185-243)||(52986249-52986307)
chr3 (185-234)||(37023817-37023866)
chr3 (195-243)||(6248453-6248501)
chr3 (182-243)||(17340465-17340526)
chr3 (183-243)||(2213920-2213980)
chr3 (195-243)||(6247394-6247442)
chr3 (195-243)||(50296216-50296264)
chr3 (195-243)||(50297311-50297359)
chr3 (195-242)||(39843061-39843108)
chr3 (195-228)||(37088173-37088206)
chr3 (198-243)||(38262340-38262385)
chr3 (195-243)||(17341497-17341545)
[»] chr4 (20 HSPs)
chr4 (183-243)||(56113755-56113815)
chr4 (186-243)||(6047064-6047121)
chr4 (195-243)||(1961170-1961218)
chr4 (192-240)||(31182624-31182672)
chr4 (181-232)||(49700727-49700778)
chr4 (185-243)||(56112695-56112753)
chr4 (187-240)||(40841995-40842048)
chr4 (185-232)||(34155898-34155945)
chr4 (185-243)||(10616088-10616146)
chr4 (185-243)||(22812633-22812691)
chr4 (185-243)||(22813287-22813345)
chr4 (180-243)||(18703212-18703276)
chr4 (195-243)||(52035150-52035198)
chr4 (181-240)||(18667319-18667378)
chr4 (195-234)||(40874065-40874104)
chr4 (185-243)||(18705393-18705451)
chr4 (195-243)||(1960905-1960953)
chr4 (185-233)||(40872955-40873003)
chr4 (186-238)||(46170300-46170352)
chr4 (195-243)||(52034162-52034210)
[»] chr6 (9 HSPs)
chr6 (185-243)||(15981018-15981076)
chr6 (185-243)||(20583017-20583075)
chr6 (185-233)||(15976612-15976660)
chr6 (192-243)||(20891813-20891864)
chr6 (184-233)||(3489369-3489418)
chr6 (183-243)||(20583974-20584034)
chr6 (185-240)||(3488034-3488089)
chr6 (173-268)||(14455016-14455111)
chr6 (185-243)||(14456192-14456249)
[»] chr2 (12 HSPs)
chr2 (185-243)||(27848336-27848394)
chr2 (195-243)||(33076254-33076302)
chr2 (185-243)||(27849383-27849441)
chr2 (185-233)||(3627615-3627663)
chr2 (195-243)||(20126195-20126243)
chr2 (195-243)||(26068901-26068949)
chr2 (192-243)||(24607779-24607830)
chr2 (185-243)||(42700950-42701008)
chr2 (185-243)||(42702116-42702174)
chr2 (183-233)||(33075184-33075234)
chr2 (199-243)||(3454445-3454489)
chr2 (195-243)||(20127351-20127399)
[»] chr1 (12 HSPs)
chr1 (185-243)||(16276964-16277022)
chr1 (186-243)||(29183455-29183512)
chr1 (195-243)||(22778637-22778685)
chr1 (185-243)||(1531635-1531693)
chr1 (185-243)||(1532573-1532631)
chr1 (185-243)||(16273730-16273788)
chr1 (195-243)||(5971096-5971144)
chr1 (176-240)||(30107064-30107128)
chr1 (185-233)||(52142869-52142917)
chr1 (185-240)||(31376529-31376584)
chr1 (185-233)||(24037903-24037951)
chr1 (195-243)||(43914917-43914965)
[»] scaffold0446 (1 HSPs)
scaffold0446 (185-243)||(11561-11619)
[»] scaffold0203 (2 HSPs)
scaffold0203 (195-243)||(9572-9620)
scaffold0203 (195-243)||(14946-14994)
[»] scaffold1212 (1 HSPs)
scaffold1212 (195-233)||(2145-2183)
[»] scaffold0008 (1 HSPs)
scaffold0008 (173-243)||(268399-268469)
[»] scaffold0151 (3 HSPs)
scaffold0151 (196-243)||(24817-24864)
scaffold0151 (196-243)||(37334-37381)
scaffold0151 (195-243)||(38363-38411)
[»] scaffold0827 (1 HSPs)
scaffold0827 (195-243)||(3287-3335)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 5386273 - 5386390
Alignment:
Q  22 acgaatatgtgacatcttaaattatttgcaaagttggagaccttctcatttatctgtctagcagtgacattatgtgcccatacgatacaatgtggaagcg 121  Q
    |||||||||||||||||||||||||||||| | ||  |   |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  5386273 acgaatatgtgacatcttaaattatttgcataattt-attgcttctcatttatttgtctagcagtgacattatgtgcgcatacgatacaatgtggaagcg 5386371  T
Q  122 atcgtaaaaaatgaggctt 140  Q
    |||  ||||||||||||||    
T  5386372 atcagaaaaaatgaggctt 5386390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 2024353 - 2024295
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  2024353 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgttcccctatt 2024295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 2023321 - 2023390
Alignment:
Q  174 aataaataattggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||||| |||||| || |||| ||||||||||||||||  ||||||||||||||||| ||||||||    
T  2023321 aataaataataggcttaaacccactatttaccccctaagtttacaaaagttgcaattttggccccctatt 2023390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 4533133 - 4533190
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  4533133 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttgg-cccctatt 4533190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 5015187 - 5015127
Alignment:
Q  182 attggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||| || ||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  5015187 attggcttaaactcactttttaacccttaagtttgtaaaagttgcaattttgg-cccctatt 5015127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 12935948 - 12935900
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  12935948 cactttttgccccctaagtttgcaaaagttgcaattatggtcccctatt 12935900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 12950105 - 12950057
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  12950105 cactttttgccccctaagtttgcaaaagttgcaattatggtcccctatt 12950057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 4534110 - 4534071
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttgg 234  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  4534110 cactttttaccccctaagtttgcaaaagttgcaattttgg 4534071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 28223723 - 28223663
Alignment:
Q  183 ttggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| || ||||||||| || |||| |||| ||||||||||||||||| ||||||||    
T  28223723 ttggcttaaactcactttttatcctctaactttgcaaaagttgcaattttggccccctatt 28223663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 29353655 - 29353608
Alignment:
Q  196 actttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| |||| ||||||||| |||||| |||||||||||||||||||    
T  29353655 acttttcaccctctaagtttgcaaaagtagcaattttggtcccctatt 29353608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 183233 - 183187
Alignment:
Q  197 ctttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| |||| |||||||| ||||||||||||||||| ||||||||    
T  183233 ctttttgccccttaagtttgcaaaagttgcaattttggccccctatt 183187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 12934727 - 12934775
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||| ||| |||||||  ||| ||||||||||||||||||||||    
T  12934727 cactttttatcccttaagtttacaaaggttgcaattttggtcccctatt 12934775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 38107150 - 38107198
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||||| |||||||||| |||| |||||||||||  ||||||||    
T  38107150 cactttttacctcctaagtttgcaaaaattgcaattttgaccccctatt 38107198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 38108140 - 38108080
Alignment:
Q  183 ttggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| || |||||||||||||||||||||| || || || |||||||| || |||||    
T  38108140 ttggcttaaacccactttttaccccctaagtttgcaacagctgtaattttggccctctatt 38108080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 23753256 - 23753317
Alignment:
Q  182 attggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23753256 attggcttaaacacactttttaccccctaagtttgtaaaagttgcaattttggccccctatt 23753317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 45021705 - 45021647
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  45021705 ggcttaaactcactttttaccccctaagtttgtaaaagttgcaattttgaccccctatt 45021647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 39582062 - 39582001
Alignment:
Q  179 ataattggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    ||||| |||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  39582062 ataataggcttaaacacactttttactccctaagtttgcaaaagttgcaattttggccccct 39582001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 14055510 - 14055453
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  14055510 ggcttaaacacactttctaccccctaagtttgcaaaagttgcaattttgg-cccctatt 14055453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 26831500 - 26831442
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| ||||||||||||||||||||||||| |||||| | |||||||| ||||||||    
T  26831500 ggcttaaacacactttttaccccctaagtttgcaaaagtagtaattttggccccctatt 26831442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 39688342 - 39688400
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || ||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  39688342 ggcttaaacccacttttgaccccttaagtttgcaaaagttgcaattttggtcccctatt 39688400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 14054118 - 14054167
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttgg 234  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  14054118 ggcttaaacacactttttacctcctaagtttgcaaaagttgcaattttgg 14054167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 44297873 - 44297816
Alignment:
Q  183 ttggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    |||||||| || || |||| ||||||||||||||||||||||||||||||||| ||||    
T  44297873 ttggcttaaacgcatttttcaccccctaagtttgtaaaagttgcaattttggttccct 44297816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 44296720 - 44296775
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    |||||| || ||||||||||||| |||||||| |||||||||||||||| ||||||    
T  44296720 ggcttaaacgcactttttaccccttaagtttgcaaaagttgcaattttgatcccct 44296775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 22255574 - 22255632
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||  ||||||||||||| ||||||||||||||||||||| ||||    
T  22255574 ggcttaaacgcacttttcgccccctaagtttgcaaaagttgcaattttggtcccatatt 22255632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 35562246 - 35562292
Alignment:
Q  187 cttacacacactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  35562246 cttaaacacactttttaccctctaagtttgcaaaagttgcaattttg 35562292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 45020585 - 45020643
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||| ||||||||| ||||||||||||||| | ||||||||    
T  45020585 ggcttaaactcactttttaccctctaagtttgcaaaagttgcaatttttgccccctatt 45020643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 45519548 - 45519490
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||| |||| |||| ||||||||||||||||| ||||||||    
T  45519548 ggcttaaacgcactttttaccctctaactttgcaaaagttgcaattttggccccctatt 45519490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 28301344 - 28301391
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaatttt 232  Q
    |||||| |||||||||||||| |||| ||||| |||||||||||||||    
T  28301344 ggcttaaacacactttttacctcctatgtttgaaaaagttgcaatttt 28301391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 28301706 - 28301659
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaatttt 232  Q
    |||||| || ||||||||||| |||||||||| |||||||||||||||    
T  28301706 ggcttaaacgcactttttacctcctaagtttgcaaaagttgcaatttt 28301659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 6571326 - 6571384
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || ||||||||| ||| |||||||| |||||||||||||||| | |||||||    
T  6571326 ggcttaaactcactttttatcccttaagtttgcaaaagttgcaattttgattccctatt 6571384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 26830325 - 26830383
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| ||||||||||||||||||| ||||| ||| || |||||||||  ||||||||    
T  26830325 ggcttaaacacactttttaccccctaggtttgcaaacgtagcaattttgaccccctatt 26830383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 41944365 - 41944403
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  41944365 cactttttaccctctaagtttgcaaaagttgcaattttg 41944403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 26363642 - 26363594
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| |||||||| |||| | ||||||||||||||| ||||||||    
T  26363642 cactttttgccccctaaatttgcagaagttgcaattttggccccctatt 26363594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 30784275 - 30784323
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||| ||||  ||| ||||||||||||||||||||||    
T  30784275 cactttttgccccctaggtttcaaaatgttgcaattttggtcccctatt 30784323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 36984146 - 36984194
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    |||||| || |||||||||||  ||||||||| ||||||||||||||||    
T  36984146 ggcttaaacgcactttttacctactaagtttgcaaaagttgcaattttg 36984194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 7314317 - 7314252
Alignment:
Q  175 ataaataattggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  7314317 ataaataataggcttaaacacactttttaccccctaagtttgcaaaagttgcaattttggccccct 7314252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 16957309 - 16957261
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  16957309 cactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 16957261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 17352881 - 17352948
Alignment:
Q  176 taaataattggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| |||||| |||||||||||| |||||||||||| |||||||| ||||||||  |||||||    
T  17352881 taaataataggcttaaacacactttttatcccctaagtttgcaaaagttgtaattttggcgccctatt 17352948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 42337069 - 42337127
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||||  |||||||    
T  42337069 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggcaccctatt 42337127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 42338211 - 42338150
Alignment:
Q  182 attggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||| || |||||||| ||||||||||||| ||||||||||||||||| | ||||||    
T  42338211 attggcttaaactcactttttgccccctaagtttgcaaaagttgcaattttggcctcctatt 42338150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 35960260 - 35960202
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || ||||||||||||||||| |||| ||||||||||||||| | ||||||||    
T  35960260 ggcttaaacccactttttaccccctaattttgcaaaagttgcaattttagccccctatt 35960202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 40322610 - 40322552
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || || ||||||||| |||| |||||||||||||||||||||| ||||||||    
T  40322610 ggcttaaacgcattttttaccctctaactttgtaaaagttgcaattttggccccctatt 40322552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 46469141 - 46469199
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| ||||||||| |||||| |||||||| ||||||||||||||| | ||||||||    
T  46469141 ggcttaaacacactttctaccccttaagtttgcaaaagttgcaattttagccccctatt 46469199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 7313069 - 7313126
Alignment:
Q  183 ttggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    |||||||| || || |||||||||| |||||||| ||||||||||||||||| |||||    
T  7313069 ttggcttaaactcattttttaccccttaagtttgcaaaagttgcaattttggccccct 7313126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 47507771 - 47507815
Alignment:
Q  196 actttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||    
T  47507771 actttttaccccttaaatttgtaaaagttacaattttggtcccct 47507815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 12384093 - 12384151
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||| ||||||||||||||||| |||||| | |||||||||| ||||||    
T  12384093 ggcttaaacgcactatttaccccctaagtttgcaaaagtagtaattttggtctcctatt 12384151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 35959081 - 35959139
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||  ||||||||||||| ||| ||||||||||||||||| ||||    
T  35959081 ggcttaaactcacttttcgccccctaagtttgcaaaggttgcaattttggtcccttatt 35959139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 40319551 - 40319605
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccc 239  Q
    |||||| || |||||||||||| |||| |||| ||||||||||||||||| ||||    
T  40319551 ggcttaaacgcactttttaccctctaactttgcaaaagttgcaattttggccccc 40319605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 37628597 - 37628549
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||||  ||||||||||| |||||||| |||||||| ||||||||    
T  37628597 cactttttaatccctaagtttgcaaaagttgtaattttggccccctatt 37628549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 40659015 - 40659051
Alignment:
Q  196 actttttaccccctaagtttgtaaaagttgcaatttt 232  Q
    ||||||||||||||||||||  |||||||||||||||    
T  40659015 actttttaccccctaagtttacaaaagttgcaatttt 40659051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 52985130 - 52985188
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  52985130 ggcttaaacacactttttaccctctaagtttgtaaaagttacaattttggtcccctatt 52985188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 40630673 - 40630625
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  40630673 cactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 40630625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 37087113 - 37087171
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||||  |||||||    
T  37087113 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggcaccctatt 37087171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 45580108 - 45580166
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||||| | ||||||    
T  45580108 ggcttaaacacactttttactccctaagtttgcaaaagttgcaattttggcctcctatt 45580166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 45583314 - 45583256
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| ||||||||| || |||||||||||| ||||||||||||||||| ||||||||    
T  45583314 ggcttaaacacactttctaacccctaagtttgcaaaagttgcaattttggccccctatt 45583256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 52986307 - 52986249
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||||||||  ||||||||    
T  52986307 ggcttaaacacactttttactccctaagtttgtaaaagttacaattttgaccccctatt 52986249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 37023866 - 37023817
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttgg 234  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  37023866 ggcttaaacacactttttacctcctaagtttgcaaaagttgcaattttgg 37023817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 6248501 - 6248453
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  6248501 cactttttgccccctaagtttgcaaaagttgcaattttggccccctatt 6248453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 17340465 - 17340526
Alignment:
Q  182 attggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||| | || |||||||| ||||||||||||| | ||||||||||||||||| ||||||    
T  17340465 attggctaaaacgcactttttgccccctaagtttgcagaagttgcaattttggtctcctatt 17340526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 2213920 - 2213980
Alignment:
Q  183 ttggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| || ||||||| |||||||||||||  ||||||||||||||||  ||||||||    
T  2213920 ttggcttaaacccacttttgaccccctaagttttcaaaagttgcaattttgaccccctatt 2213980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 6247394 - 6247442
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||||||||| ||||||||||||||||  ||||||||    
T  6247394 cactttttgccccctaagtttgcaaaagttgcaattttgaccccctatt 6247442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 50296216 - 50296264
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| |||| |||||||| ||||||||||||||||| ||||||||    
T  50296216 cactttttgccccttaagtttgcaaaagttgcaattttggccccctatt 50296264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 50297359 - 50297311
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||| ||||    
T  50297359 cactttttgccccctaagtttgcaaaagttgcaattttggccccttatt 50297311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 39843061 - 39843108
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctat 242  Q
    |||||||| |||| |||||||| ||||||||||||||| |||||||||    
T  39843061 cactttttcccccttaagtttgaaaaagttgcaattttagtcccctat 39843108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 37088206 - 37088173
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaa 228  Q
    |||||||||||||||||||||| |||||||||||    
T  37088206 cactttttaccccctaagtttgcaaaagttgcaa 37088173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 38262385 - 38262340
Alignment:
Q  198 tttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||| ||||||||||||| | ||||||||||||||| ||||||||    
T  38262385 tttttgccccctaagtttgcagaagttgcaattttggccccctatt 38262340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 17341545 - 17341497
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||||||||| | ||||||||||||||  ||||||||    
T  17341545 cactttttgccccctaagtttgcagaagttgcaattttgaccccctatt 17341497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 56113815 - 56113755
Alignment:
Q  183 ttggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  56113815 ttggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 56113755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 6047064 - 6047121
Alignment:
Q  186 gcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  6047064 gcttaaacccactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 6047121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 1961218 - 1961170
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  1961218 cactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 1961170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 31182624 - 31182672
Alignment:
Q  192 acacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  31182624 acacactttttaacccctaagtttgtaaaagttgtaattttggtcccct 31182672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 49700778 - 49700727
Alignment:
Q  181 aattggcttacacacactttttaccccctaagtttgtaaaagttgcaatttt 232  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  49700778 aattggcttaaacacactttttaccccctatgtttgcaaaagttgcaatttt 49700727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 56112695 - 56112753
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||| | ||||||||    
T  56112695 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttagccccctatt 56112753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 40841995 - 40842048
Alignment:
Q  187 cttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    |||| |||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  40841995 cttaaacacacttttcaccctctaagtttgcaaaagttgcaattttggtcccct 40842048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 34155898 - 34155945
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaatttt 232  Q
    |||||| ||||||||||||||||||||||||  |||||||||||||||    
T  34155898 ggcttaaacacactttttaccccctaagtttacaaaagttgcaatttt 34155945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 10616146 - 10616088
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| ||||||||| |||||||||| |||| ||||||||||||||||  ||||||||    
T  10616146 ggcttaaacacactttctaccccctaaatttgcaaaagttgcaattttgaccccctatt 10616088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 22812633 - 22812691
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || ||||||| ||||| |||||||| |||||||||||||||| |||||||||    
T  22812633 ggcttaaacccacttttgaccccttaagtttgcaaaagttgcaattttgatcccctatt 22812691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 22813345 - 22813287
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || ||||||| ||| | |||||||| ||||||||||||||||||||||||||    
T  22813345 ggcttaaacccacttttgacctcttaagtttgcaaaagttgcaattttggtcccctatt 22813287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 18703212 - 18703276
Alignment:
Q  180 taattggcttacacacactttttacccc-ctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||| |||||| |||||||||||||||| ||||||||| ||| ||||||||||||| || |||||    
T  18703212 taataggcttaaacacactttttacccccctaagtttgcaaacgttgcaattttggccctctatt 18703276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 52035198 - 52035150
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||||||| ||| |||| ||||||||||||||||| ||||||||    
T  52035198 cactttttaccccttaaatttgcaaaagttgcaattttggccccctatt 52035150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 18667378 - 18667319
Alignment:
Q  181 aattggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    |||||||||| ||| |||||||||||  || ||||| ||||||||||||||||| |||||    
T  18667378 aattggcttaaacatactttttaccctttatgtttgcaaaagttgcaattttggccccct 18667319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 40874104 - 40874065
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttgg 234  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  40874104 cacttttcaccccctaagtttgcaaaagttgcaattttgg 40874065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 18705451 - 18705393
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||| ||||||||||||||||| |||||| |||||||||  ||||||||    
T  18705451 ggcttaaacgcactatttaccccctaagtttgcaaaagtagcaattttgaccccctatt 18705393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 1960905 - 1960953
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||||||  |||||||| |||||||||||||||||  |||||||    
T  1960905 cactttttacccattaagtttgcaaaagttgcaattttggcaccctatt 1960953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 40872955 - 40873003
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    |||||| || ||||||| |||||||||||||| |||||||| |||||||    
T  40872955 ggcttaaacccacttttcaccccctaagtttgcaaaagttgtaattttg 40873003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 46170300 - 46170352
Alignment:
Q  186 gcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtccc 238  Q
    ||||| || ||||||||||| ||||||||||   |||||||||||||||||||    
T  46170300 gcttaaacccactttttacctcctaagtttgcggaagttgcaattttggtccc 46170352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 52034162 - 52034210
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||| ||| |||||||| ||||| ||||||||||| ||||||||    
T  52034162 cactttttatcccttaagtttgcaaaagctgcaattttggccccctatt 52034210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 15981076 - 15981018
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  15981076 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 15981018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 20583017 - 20583075
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||||||  ||||||||    
T  20583017 ggcttaaacacactttttatcccctaagtttggaaaagttgcaattttgaccccctatt 20583075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 15976612 - 15976660
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||    
T  15976612 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttg 15976660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 20891813 - 20891864
Alignment:
Q  192 acacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||||| ||||||||||||| | ||||||||||||||| ||||||||    
T  20891813 acacactttttgccccctaagtttgcagaagttgcaattttggccccctatt 20891864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 3489418 - 3489369
Alignment:
Q  184 tggcttacacacactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    ||||||| || ||||||||||||||||||||||||||||| | |||||||    
T  3489418 tggcttaaacgcactttttaccccctaagtttgtaaaagtaggaattttg 3489369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 20584034 - 20583974
Alignment:
Q  183 ttggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||  ||||||||||| ||||||||| ||||||||||||||||  ||||||||    
T  20584034 ttggcttaaacgtactttttaccctctaagtttgcaaaagttgcaattttgaccccctatt 20583974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 3488034 - 3488089
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    |||||| || ||||||||| |||||||||||| |||||| | ||||||||||||||    
T  3488034 ggcttaaacgcactttttatcccctaagtttgcaaaagtagaaattttggtcccct 3488089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 14455016 - 14455111
Alignment:
Q  173 taataaataattggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctattnnnnnnnntggcaaaaatgaccctt 268  Q
    |||| |||||| || ||| || |||| |||| ||||||||||| ||||||| |||||||||| ||||||||        |||||||||||||||||    
T  14455016 taattaataataggtttaaacgcactatttatcccctaagtttctaaaagtagcaattttggccccctattaaaaaaaatggcaaaaatgaccctt 14455111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 14456249 - 14456192
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||| ||||||| ||||||| ||||||||| ||||||||    
T  14456249 ggcttaaacgcactttttacccccaaagtttgcaaaagttacaattttgg-cccctatt 14456192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 27848336 - 27848394
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  27848336 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 27848394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 33076302 - 33076254
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  33076302 cactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 33076254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 27849441 - 27849383
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || ||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  27849441 ggcttaaactcactttttacctcctaagtttgtaaaagttgcaattttagccccctatt 27849383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 3627615 - 3627663
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||||    
T  3627615 ggcttaaacacactttttaccccttaagtttgcaaaagttgcaattttg 3627663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 20126195 - 20126243
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  20126195 cactttttgccccctaagtttgcaaaagttgcaattttggccccctatt 20126243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 26068901 - 26068949
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  26068901 cactttttaccccttaagtttgcaaaagttgcaattttggccccctatt 26068949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 24607830 - 24607779
Alignment:
Q  192 acacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||    
T  24607830 acacactttttgccccctaagtttgcaaaggttgcaattttggccccctatt 24607779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 42700950 - 42701008
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| ||| ||||||||||||||||||||| ||| ||||||||||||  ||||||||    
T  42700950 ggcttaaacaaactttttaccccctaagtttgcaaaggttgcaattttgaccccctatt 42701008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 42702174 - 42702116
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || ||||||||||||| |||||||  ||| ||||||||||||||||||||||    
T  42702174 ggcttaaacgcactttttaccccttaagtttacaaaggttgcaattttggtcccctatt 42702116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 33075184 - 33075234
Alignment:
Q  183 ttggcttacacacactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    |||||||| ||  |||||||||| ||||||||||||||||||| |||||||    
T  33075184 ttggcttaaacttactttttacctcctaagtttgtaaaagttgtaattttg 33075234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 3454489 - 3454445
Alignment:
Q  199 ttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||| ||||||||||||| |||||||| |||||||| ||||||||    
T  3454489 ttttgccccctaagtttgcaaaagttgtaattttggccccctatt 3454445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 20127399 - 20127351
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||||||||| |||||||  ||| ||||||||||||| ||||||||    
T  20127399 cactttttaccccttaagtttacaaaggttgcaattttggccccctatt 20127351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 16277022 - 16276964
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  16277022 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 16276964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 29183512 - 29183455
Alignment:
Q  186 gcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  29183512 gcttaaacacactttttaccctctaagtttgaaaaagttgcaattttggccccctatt 29183455  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 22778685 - 22778637
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  22778685 cactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 22778637  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 1531635 - 1531693
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||| ||||||||||| ||||||||||||||||  ||||||||    
T  1531635 ggcttaaactcactttttactccctaagtttgcaaaagttgcaattttgaccccctatt 1531693  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 1532631 - 1532573
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||| | ||||||||||||||| ||| ||||    
T  1532631 ggcttaaacccactttttaccccctaagtttgcagaagttgcaattttggccccatatt 1532573  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 16273730 - 16273788
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || ||||||||||||| |||||||| ||||||||||||||||  ||||||||    
T  16273730 ggcttaaactcactttttaccccataagtttgcaaaagttgcaattttgaccccctatt 16273788  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 5971096 - 5971144
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||||||||| ||||||||||||||| | ||||||||    
T  5971096 cactttttgccccctaagtttgcaaaagttgcaattttagccccctatt 5971144  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 30107128 - 30107064
Alignment:
Q  176 taaataattggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    ||||||||  ||||| || |||||||  ||||||||||||| ||| |||||||||||||||||||    
T  30107128 taaataataagcttaaacgcacttttcgccccctaagtttgcaaatgttgcaattttggtcccct 30107064  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 52142869 - 52142917
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    |||||| ||| |||||||||||||||||||||||||||||  |||||||    
T  52142869 ggcttaaacatactttttaccccctaagtttgtaaaagttataattttg 52142917  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 31376529 - 31376584
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccct 240  Q
    |||||| || ||||||| |||| ||||||||| ||||||||||||||||| |||||    
T  31376529 ggcttaaacgcacttttcaccctctaagtttgcaaaagttgcaattttggccccct 31376584  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 24037903 - 24037951
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    |||||| || ||||||||| ||| |||||||| ||||||||||||||||    
T  24037903 ggcttaaactcactttttatcccttaagtttgcaaaagttgcaattttg 24037951  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 43914917 - 43914965
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||  ||||||||||||| ||| ||||||||||||| ||||||||    
T  43914917 cacttttcgccccctaagtttgcaaaggttgcaattttggccccctatt 43914965  T

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Target: scaffold0446 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 11561 - 11619
Alignment:
Q  185 ggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||| | ||||||||    
T  11561 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttagccccctatt 11619  T

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Target: scaffold0203 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 9572 - 9620
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  9572 cactttttgccccctaagtttgcaaaagttgcaattttggccccctatt 9620  T

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Target: scaffold0203; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 14946 - 14994
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  14946 cactttttgccccctaagtttgcaaaagttgcaattttggccccctatt 14994  T

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Target: scaffold1212 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 2145 - 2183
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttg 233  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  2145 cactttttaccccctaagtttgcaaaagttgcaattttg 2183  T

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Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 268399 - 268469
Alignment:
Q  173 taataaataattggcttacacacactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||| ||| |||| | || ||||||||||| | |||||||| ||||||||||||||||| ||||||||    
T  268399 taataaagaataggctaaaacgcactttttacctcttaagtttgcaaaagttgcaattttggccccctatt 268469  T

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Target: scaffold0151 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 24817 - 24864
Alignment:
Q  196 actttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||| ||||||||||||| | ||||||||||||||| ||||||||    
T  24817 actttttgccccctaagtttgcagaagttgcaattttggccccctatt 24864  T

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Target: scaffold0151; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 37334 - 37381
Alignment:
Q  196 actttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    ||||||| ||||||||||||| | ||||||||||||||| ||||||||    
T  37334 actttttgccccctaagtttgcagaagttgcaattttggccccctatt 37381  T

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Target: scaffold0151; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 38411 - 38363
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||| |||| |||||||| | ||||||||||||||| ||||||||    
T  38411 cactttttgccccttaagtttgcagaagttgcaattttggccccctatt 38363  T

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Target: scaffold0827 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0827
Description:

Target: scaffold0827; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 3335 - 3287
Alignment:
Q  195 cactttttaccccctaagtttgtaaaagttgcaattttggtcccctatt 243  Q
    |||||||||| | ||||||||| ||||||||||||||||  ||||||||    
T  3335 cactttttacacgctaagtttgcaaaagttgcaattttgaccccctatt 3287  T

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