View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_high_3 (Length: 408)
Name: NF10148_high_3
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 52548787 - 52548586
Alignment:
| Q |
9 |
tgagatgaataactaactagtataactattatgaacaaaggaaagagaaaggaaattgatttctcattcctgaattagaagagtataagatacttatata |
108 |
Q |
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| T |
52548787 |
tgagaagaataactaactagtataactattatgaacaaaggaaagagaaaggaaattgatttctcattactgaattagaagagtataagatacttatata |
52548688 |
T |
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| Q |
109 |
cgcatattgagctctatgttagcttattgtatg--------------ttgctaacacttaacaaactcaaagttatgcaatgaataagtaatcatttcta |
194 |
Q |
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| T |
52548687 |
cgcatattgagctctatgttagcttattgtatgtaacctacattagattgctaacacttaacaaactcaaagttatgcaatgaataagtaatcatttcta |
52548588 |
T |
|
| Q |
195 |
ac |
196 |
Q |
| |
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|| |
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| T |
52548587 |
ac |
52548586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 26619274 - 26619328
Alignment:
| Q |
142 |
ttgctaacacttaacaaactcaaagttatgcaatgaataagtaatcatttctaac |
196 |
Q |
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| T |
26619274 |
ttgctaacacataacaaactcaaagctatgcaatgattaagtaatcatttctaac |
26619328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 26619219 - 26619255
Alignment:
| Q |
101 |
cttatatacgcatattgagctctatgttagcttattg |
137 |
Q |
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| T |
26619219 |
cttatatacgcatattgaactctatgatagcttattg |
26619255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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