View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10148_low_12 (Length: 428)
Name: NF10148_low_12
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 25 - 414
Target Start/End: Original strand, 48766359 - 48766748
Alignment:
| Q |
25 |
tggattatgatttgttgctgtaaatattacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccagatttaatcacagtt |
124 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||| || |
|
|
| T |
48766359 |
tggattaggatttgttgctgtaaatattacacgcagttgcacgctgtagcacatctcaaccgtagatatgagatccgtcggttcagatttaatcacaatt |
48766458 |
T |
|
| Q |
125 |
tcacacagtaaaataatctcaaccatcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaacagcagggaatctgattcccatttcta |
224 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48766459 |
tcacattgtaaaataatctcagccatcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaacagcagggaatctgattcccatttcta |
48766558 |
T |
|
| Q |
225 |
ctaatgattaagcaaagaattgcaggttgaaacaaaagcaattgtcttttgcaagaagacaccaaatccacacggtgtttgcaacaatcacattttaacc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48766559 |
ctaatgattaagcaaagaattgcaggttgaaacaaaagcaattgtcttttgcaagaagacaccaaatccacacggtgtttgcaacaatcacattttaacc |
48766658 |
T |
|
| Q |
325 |
aaattaattttactgcccgcataaagtcatgtgattgtttgcatgatcaaaatgcatctcacaaacaaacacttattttttgcgtatttt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48766659 |
aaattaattttactgcccgcataaagtcatgtgattgtttgcatgatcgaaatgcgtctcacaaacaaacacttattttttgcgtatttt |
48766748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 26 - 214
Target Start/End: Complemental strand, 25452771 - 25452584
Alignment:
| Q |
26 |
ggattatgatttgttgctgtaaatattacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccagatttaatcacagttt |
125 |
Q |
| |
|
|||||| |||||| || ||||||| ||| || ||||||||| |||||||| |||||||| ||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
25452771 |
ggattaggatttgctgttgtaaat-ttaaacgcagttgcacactgtagcatatctcaacagtagatatgagatccgtcggtccagatttaatcacagttt |
25452673 |
T |
|
| Q |
126 |
cacacagtaaaataatctcaaccatcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaacagcagggaatctgatt |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25452672 |
cacacagtaaaataatctcagccatcaatttaaaattgaatggtctggatcagttacagcaccctgctgtaacagcagggaatctgatt |
25452584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 17229771 - 17229662
Alignment:
| Q |
51 |
ttacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccagatttaatcacagtttcacacagtaaaataatctcaaccat |
150 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
17229771 |
ttacacgcagttgcacgctgtagtacatttcaaccgtagatatgagatccatcggtccagatttaatcacagtcttacacagtaaaataatttcaaccat |
17229672 |
T |
|
| Q |
151 |
caatttaaaa |
160 |
Q |
| |
|
|||||||||| |
|
|
| T |
17229671 |
caatttaaaa |
17229662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 38953705 - 38953515
Alignment:
| Q |
26 |
ggattatgatttgttgctgtaaatattacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccagatttaatcacagttt |
125 |
Q |
| |
|
|||||| |||||| |||||||||| |||||| ||||||||||||||||||||||||| | ||| ||||||||||| | |||||||||||||||||||||| |
|
|
| T |
38953705 |
ggattaggatttgctgctgtaaat-ttacacgcagttgcacgctgtagcacatctcagccgtaaatatgagatccgtcggtccagatttaatcacagttt |
38953607 |
T |
|
| Q |
126 |
cacacagtaaaataatctcaaccatcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaacagcagggaatctgattccc |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
38953606 |
cacacagtaaaataatctcagccatcaatttaaaattgaatggcctggatcatttacatcaccctgctgtaacagcaaggaatctgattccc |
38953515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 30198344 - 30198155
Alignment:
| Q |
26 |
ggattatgatttgttgctgtaaatattacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccagatttaatcacagttt |
125 |
Q |
| |
|
|||||| |||||| || ||||||| |||||| |||||||||||||||||||||||||| | ||||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
30198344 |
ggattaggatttgctggtgtaaat-ttacacgcagttgcacgctgtagcacatctcaattatagatttgatatccattggttcagatttaatcacagttt |
30198246 |
T |
|
| Q |
126 |
cacacagtaaaataatctcaaccatcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaacagcagggaatctgattcc |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30198245 |
cacacagtaaaataatctcagccatcaatttaaaattgaatgacctagatcagttacagcaccctgctgtaacagcagggaatctgattcc |
30198155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 47244120 - 47243967
Alignment:
| Q |
64 |
cacgctgtagcacatctcaactgtagatatgagatccattggtccagatttaatcacagtttcacacagtaaaataatctcaaccatcaatttaaaattg |
163 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||||| | |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47244120 |
cacgcagtagcacatctcaaacgtaaatatgagatcagtcggtccatatttaatcacggtttcacacagtaaaataatctcagccatcaatttaaaattg |
47244021 |
T |
|
| Q |
164 |
aatggcctggatcagttacagcaccctgctgtaacagcagggaatctgattccc |
217 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
47244020 |
aatggcctagatcagttacaacaccctgctgtaacaacgaggaatctgattccc |
47243967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 43632852 - 43632885
Alignment:
| Q |
40 |
tgctgtaaatattacacacagttgcacgctgtag |
73 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
43632852 |
tgctgtaaatattacacgcagttgcacgctgtag |
43632885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 40 - 216
Target Start/End: Complemental strand, 40799962 - 40799786
Alignment:
| Q |
40 |
tgctgtaaatattacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccagatttaatcacagtttcacacagtaaaata |
139 |
Q |
| |
|
|||| ||||||| |||| |||||||||||| || ||||||||||| |||||||||| || | |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
40799962 |
tgctctaaatatcacacgcagttgcacgctataacacatctcaaccgtagatatgaattcagtcggtccagatttaatcaaagtttcacaaagtaaaatg |
40799863 |
T |
|
| Q |
140 |
atctcaaccatcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaacagcagggaatctgattcc |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
40799862 |
atctcatccatcaatttaaaattgaatggcctggattagttacagcaccctgatgtaacaacagggaatctgattcc |
40799786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 11106888 - 11106713
Alignment:
| Q |
43 |
tgtaaatattacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccagatttaatcacagtttcacacagtaaaataatc |
142 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||||||||| |||||||||| || | | | |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
11106888 |
tgtaaatattacacgcatttgcacgatgtagcacatctcaaccgtagatatgacattcgtcgatccagatttaatcacaatttcacacaataaaataatc |
11106789 |
T |
|
| Q |
143 |
tcaaccatcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaacagcagggaatctgattccca |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||||| |||||| ||||| || |||||||||||||||||| |
|
|
| T |
11106788 |
tcaaccatcaatttaaaattaaatggcctgaatcatttacaacaccctactgtatcaacagggaatctgattccca |
11106713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 3535619 - 3535452
Alignment:
| Q |
50 |
attacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccagattt-aatcacagtttcacacagtaaaataatctcaacc |
148 |
Q |
| |
|
|||| ||| ||||||||| ||||||| |||||||| | ||||||||||| | ||||||| ||| ||||||||||||| ||||| |||| ||||| | |
|
|
| T |
3535619 |
attagacatagttgcacgatgtagcatatctcaaccatggatatgagatcggtcggtccagtttttaatcacagtttcatacagtgaaatgatctcggca |
3535520 |
T |
|
| Q |
149 |
atcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaacagcagggaatctgattcc |
216 |
Q |
| |
|
||||||||||||||| | || || ||| ||||| | | |||| ||||||||||| ||||| ||||| |
|
|
| T |
3535519 |
atcaatttaaaattggacggtctagataagttatatcgccctattgtaacagcagaaaatctaattcc |
3535452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 48425838 - 48425663
Alignment:
| Q |
25 |
tggattatgatttgttgctgtaaatattacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccagatttaatcacagtt |
124 |
Q |
| |
|
||||||| |||||| || ||||||| ||||| |||||||||||||||||||||| ||| ||||||||||||||| | ||| ||||| ||||||||||| |
|
|
| T |
48425838 |
tggattaggatttgctgttgtaaat-ttacatgcagttgcacgctgtagcacatc--aaccgtagatatgagatccgtcggttcagatctaatcacagtt |
48425742 |
T |
|
| Q |
125 |
tcacacagtaaaataatctcaaccatcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaacagcag |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
48425741 |
tcacacagtaaaataatctcagccatcaatttaaaatagaatggtttggatcaattacagcaccctgctgtaacagcag |
48425663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 13136768 - 13136638
Alignment:
| Q |
28 |
attatgatttgttgctgtaaatattacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccagatttaatcacagtttca |
127 |
Q |
| |
|
|||| |||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| | |
|
|
| T |
13136768 |
attaggatttgctgctgtaaatattacacgcagttacacgcggtagcacatctcaaccgtagatatgagatccgtcggtccagatttaatcacagtttta |
13136669 |
T |
|
| Q |
128 |
cacagtaaaataatctcaaccatcaatttaa |
158 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |
|
|
| T |
13136668 |
cacagtaatataatctcagccatcaatttaa |
13136638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 22042096 - 22042258
Alignment:
| Q |
26 |
ggattatgatttgttgctgtaaatattacacacagttgcacgctgtagcacatctcaactgtagatatgagatccattggtccaga-tttaatcacagtt |
124 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| || ||| |||| ||||||||||||| |
|
|
| T |
22042096 |
ggattatgattttctgctgtaaatattacacgtagttgcacgctgtagcatatctcaatcgtagatatgagatcgatcggttcagattttaatcacagtt |
22042195 |
T |
|
| Q |
125 |
tcacacagtaaaataatctcaaccatcaatttaaaattgaatggcctggatcagttacagcac |
187 |
Q |
| |
|
| |||||||||||| || ||| ||||||||||||||||||| || | ||||||| ||||||| |
|
|
| T |
22042196 |
ttacacagtaaaatgatttcagtcatcaatttaaaattgaattgcatagatcagtgacagcac |
22042258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 14670622 - 14670524
Alignment:
| Q |
40 |
tgctgtaaatattacacacagttgcacgctgt-agcacatctcaactgtagatatgagatccattggtccagatttaatcacagtttcacacagtaaaat |
138 |
Q |
| |
|
|||| ||||| |||||| |||||||||||| | |||||||||||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
14670622 |
tgctataaatgttacacgcagttgcacgctctgagcacatctcaactgtagatatgagatctgtcggt-cagacttaatcacagtttcacacagtaaaat |
14670524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 27446540 - 27446596
Alignment:
| Q |
26 |
ggattatgatttgttgctgtaaatattacacacagttgcacgctgtagcacatctca |
82 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
27446540 |
ggattaggatttcatgctgtaaatatcacacgcagttgcacgctgtagtacatctca |
27446596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 26857234 - 26857139
Alignment:
| Q |
103 |
tggtccagatttaatcacagtttcacacagtaaaataatctcaaccatcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaac |
198 |
Q |
| |
|
|||| ||||||||| |||||||| ||| |||| |||||||| ||| | ||||||||| | | |||| |||||||| ||||||||||||||||| |
|
|
| T |
26857234 |
tggttcagatttaaacacagttttacagtctaaagtaatctcagccacccatttaaaatcggacggcccagatcagttgcagcaccctgctgtaac |
26857139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 26598350 - 26598389
Alignment:
| Q |
179 |
ttacagcaccctgctgtaacagcagggaatctgattccca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26598350 |
ttacagcaccctgctgtaacagcagggaatccaattccca |
26598389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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