View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_13 (Length: 421)
Name: NF10148_low_13
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 71 - 409
Target Start/End: Complemental strand, 8765336 - 8764998
Alignment:
| Q |
71 |
gacatcttcctgccatcccgaaccactcgagacaagccctctgcaaaccaatatgaagagaaattcgacttggagccgagcaaagaaaccccttttccac |
170 |
Q |
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| T |
8765336 |
gacatcttcctgccatcccaaaccactcaagacaagccctctgcaaaccaatctgaagagaaattcgacttggagccgagcaaagaaaccccttttccac |
8765237 |
T |
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| Q |
171 |
cagggcgaaggagatttcagagacctagctctcatcccaaaattacaagacgtcgtggcagacccatacctggctgaaaagatactacgccacaagccat |
270 |
Q |
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| T |
8765236 |
cagggcgaaggagatttcagggacctagctctcatcccaaaattacaagacatcgcggcagacccatacctggatgaaaagatactacgccacaagccat |
8765137 |
T |
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| Q |
271 |
caccctccgctagaatcctccacctctagttaccaaacatggccaagttaacaagatctatctattacctccaaagcaccctctcttttcagcttacaaa |
370 |
Q |
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| T |
8765136 |
caccctccgctagaatcctccacctccagttaccaaacatggccaagttaacaagatctatctcttacctccaaagcaccctctcttttcagcttacaaa |
8765037 |
T |
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| Q |
371 |
tttttgaccagctagcccaagatattttattccctccct |
409 |
Q |
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| T |
8765036 |
tttttgaccagctagcccaagatattttattccctccct |
8764998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 8765691 - 8765625
Alignment:
| Q |
6 |
aatcagatcaaccgggtcaacaaccgcctcagacttcccaccctattgaattgaggcagcggaaaga |
72 |
Q |
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| T |
8765691 |
aatcagatcaagcgggtcaacaaccgcctcaaacttcccacccaattgaattgaggcagctgaaaga |
8765625 |
T |
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