View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10148_low_14 (Length: 413)
Name: NF10148_low_14
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_14 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 16658209 - 16658589
Alignment:
| Q |
20 |
aaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggact |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658209 |
aaataccttttgttttgcaaaatatcttgaaccttttttttccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggact |
16658308 |
T |
|
| Q |
120 |
ctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgag |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16658309 |
ctaaaattttcagtaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgaagaccatttgagcgag |
16658408 |
T |
|
| Q |
220 |
tgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcatttagaagaaactctacaatcttctctttatct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16658409 |
tgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcatttagaagaaactctacaatctgctctttatct |
16658508 |
T |
|
| Q |
320 |
ttgtctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttggtgctcctct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16658509 |
ttgtctcttccatatactttcggttcggtgacagtagaaatagtttggcgccattcatcatctcctcgttgctgctcctct |
16658589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 17069706 - 17070085
Alignment:
| Q |
20 |
aaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggact |
119 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17069706 |
aaataccttttgctttgcaaaatttcttgaacctttttttgccttgactctaaagacaagagatctagattttttccaatggtgttttctatgatggact |
17069805 |
T |
|
| Q |
120 |
ctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069806 |
ctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgag |
17069905 |
T |
|
| Q |
220 |
tgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcatttagaagaaactctacaatcttctctttatct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17069906 |
tgttgtttttccttgtccgccaacaccaacaatggaatagacagagagttcttcactgtcactagcatttagaagaaactctacaatctgctctttatct |
17070005 |
T |
|
| Q |
320 |
ttgtctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttggtgctcctc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
17070006 |
ttgtctcttccatatactttcggttcggtgatagcagaaatagtttggatctgttcatcatctcctcgttggtgctcctc |
17070085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 68 - 400
Target Start/End: Complemental strand, 16867916 - 16867586
Alignment:
| Q |
68 |
tctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattt |
167 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
16867916 |
tctaaagacaagagatctagattttttccaatggtgttttctgtgatggactctaaaattttcatcaaactgaaatcgtccgaaacacac--ccatattt |
16867819 |
T |
|
| Q |
168 |
tcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagag |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867818 |
tcaagtcaaaatgtgtttttaccctttcatcattgaagaccacttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagag |
16867719 |
T |
|
| Q |
268 |
ttcttcactgtcgctagcatttagaagaaactctacaatcttctctttatctttgtctcttccatatactttcggttcggtgacagtagaaatcgtttgg |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
16867718 |
ttcttcactgtcgctagcatttagaagaaactctacaatctgctctttatctttgtctcttccatatactttcggttcggtaacaatagaaatagtttgg |
16867619 |
T |
|
| Q |
368 |
cgccattcatcatctcctcgttggtgctcctct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
16867618 |
cgccattcatcatctcctcgttggtgctcctct |
16867586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 16837877 - 16838260
Alignment:
| Q |
20 |
aaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggtttt-ttccaatggtgttttctatgatggac |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
16837877 |
aaataccttttgttttgcaaaatttcttgaaccttttttcgcaaggactctaaagacaagagatctagatttttttccaatggtgttttctatgatggac |
16837976 |
T |
|
| Q |
119 |
tctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16837977 |
tctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccacttgagcga |
16838076 |
T |
|
| Q |
219 |
gtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctcttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||| |
|
|
| T |
16838077 |
gtgttgtttttccttgtccgccaacaccaacaatggaatagacagagagttcttcactgttactagcatgccctataagaaactctacaatctgctcttt |
16838176 |
T |
|
| Q |
316 |
atctttgtctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttggtgctcctc |
399 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| | ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
16838177 |
atctttgtctcttccatatacttttggttcggtgacagcagaagtagttaggatccattcatcatctcctcgttggtgctcctc |
16838260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 16797366 - 16797748
Alignment:
| Q |
20 |
aaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggact |
119 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
16797366 |
aaatacctttggttttgcaaaatttcttgaaccttttttcgcaaggactctaaagacaagagttctagattttttccaatggtgttttctatgatagact |
16797465 |
T |
|
| Q |
120 |
ctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16797466 |
ctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccacttgagcgag |
16797565 |
T |
|
| Q |
220 |
tgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctcttta |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
16797566 |
tgttgtttttccttgtccgccaacaccaacaatggaatagacagagagttcttcactggtactagcatgccctagaagaaactctacaatctgttcttta |
16797665 |
T |
|
| Q |
317 |
tctttgtctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttggtgctcctc |
399 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||| | ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
16797666 |
tctttgtctcttccatatacttttggttcggtgacagcagaagtagttaggatccattcatcatctcctcgttggtgctcctc |
16797748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 63 - 399
Target Start/End: Original strand, 16987697 - 16988036
Alignment:
| Q |
63 |
ttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacaccca |
162 |
Q |
| |
|
|||||||||||||| |||||| | | ||||||||||| |||||||| ||||| |||||||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
16987697 |
ttgactctaaagacgagagatgtggattttttccaatagtgttttcaatgatcgactctaaaactttcatcatactgaaatcatcagaaacacacaccca |
16987796 |
T |
|
| Q |
163 |
tattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagaca |
262 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||| ||||||||| | ||| || |||||||||||| ||||| |
|
|
| T |
16987797 |
tattttcaagtcaaaatgtgtctttacactttcatcattgaagaccatttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagaca |
16987896 |
T |
|
| Q |
263 |
gagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctctttatctttgtctcttccatatactttcggttcggtgacagtagaaa |
359 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
16987897 |
gagagtttttcactgtcactagcatgtcttagaagaaactctacaatctgttctttatctttgtctcttccatatactttcggttctgtgatagtagaaa |
16987996 |
T |
|
| Q |
360 |
tcgtttggcgccattcatcatctcctcgttggtgctcctc |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16987997 |
tagtttggcgccattcatcatctcctcgttgatgctcctc |
16988036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 18873143 - 18872771
Alignment:
| Q |
22 |
ataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactct |
121 |
Q |
| |
|
||||||||||||||||||||||| || |||| | |||| ||||||||| |||||||| | ||||||||| |||| |||||||||||||| |
|
|
| T |
18873143 |
ataccttttgttttgcaaaatatttttaaccttcttttgcattgattctaaagacgagagatctggattttttccatcggtggattctatgatggactgc |
18873044 |
T |
|
| Q |
122 |
aaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtg |
221 |
Q |
| |
|
|||| |||||||| ||| ||||| || ||||||||||||||||||||||||| ||| ||||| | |||||||||||||||| |||||| |||||| |||| |
|
|
| T |
18873043 |
aaaactttcatcatactaaaatcctcagaaacacacacccatattttcaagttaaagtgtgtatctaccctttcatcattgaagaccacttgagcaagtg |
18872944 |
T |
|
| Q |
222 |
ttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctctttatc |
318 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||| |||| | |||| | || |
|
|
| T |
18872943 |
ttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcatgacttagaagaaactcaacaacttgctctctgtc |
18872844 |
T |
|
| Q |
319 |
tttgtctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttgg |
391 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
18872843 |
acgatctcttccatatactttcggttcagtgatgacagaaaaagtttggcgccatttatcatctcctcgttgg |
18872771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 18806149 - 18805777
Alignment:
| Q |
22 |
ataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactct |
121 |
Q |
| |
|
||||||||||||||||||||| | |||||| | |||| ||||||||| |||||||| | ||||||||| || | |||||||||||||| |
|
|
| T |
18806149 |
ataccttttgttttgcaaaattttttgaacttccttttgcattgattctaaagacgagagatctggactttttccaacggcggattctatgatggactgc |
18806050 |
T |
|
| Q |
122 |
aaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtg |
221 |
Q |
| |
|
|||| |||||||| ||| ||||| || ||||||||||||||||||||||||| ||| ||||| | |||||||||||||||| | |||| |||||| |||| |
|
|
| T |
18806049 |
aaaactttcatcatactaaaatcctcagaaacacacacccatattttcaagttaaagtgtgtatctaccctttcatcattgaataccacttgagcaagtg |
18805950 |
T |
|
| Q |
222 |
ttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctctttatc |
318 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||| |||| | |||| | || |
|
|
| T |
18805949 |
ttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcatgacttagaagaaactcaacaacttgctctctgtc |
18805850 |
T |
|
| Q |
319 |
tttgtctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttgg |
391 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
18805849 |
acgatctcttccatatactttcggttcagtgatgactgaattagtttggcgccatttatcatctcctcgttgg |
18805777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 137 - 339
Target Start/End: Original strand, 16781422 - 16781627
Alignment:
| Q |
137 |
ctgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtgttgtttttccttgtc |
236 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| |||||||| || |||| |||||||| ||||| |||| |||||| |||||||||||||| | || |
|
|
| T |
16781422 |
ctgaaatcatctgaaacacaaacccatattttcaaatcaaaatgggtggttacgctttcatccttgtataccaattgagcaagtgttgtttttccatatc |
16781521 |
T |
|
| Q |
237 |
cgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctctttatctttgtctcttccata |
333 |
Q |
| |
|
| || | |||||||||||| |||||||||| |||||||| | |||||||| | |||||| |||| ||||| | ||||||||| ||||||||||||| |
|
|
| T |
16781522 |
cacctaggccaacaatggaatagacagagagatcttcactattgctagcatgcctcagaagatactcaacaatttgttctttatctctgtctcttccata |
16781621 |
T |
|
| Q |
334 |
tacttt |
339 |
Q |
| |
|
|||||| |
|
|
| T |
16781622 |
tacttt |
16781627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 390
Target Start/End: Original strand, 16788169 - 16788538
Alignment:
| Q |
22 |
ataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactct |
121 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| | ||||||| ||||| |||||||| | ||||||||||| |||| |||||||| || |||| |
|
|
| T |
16788169 |
ataccttttgttttg-aaaatttcttgaaccttctttcgcattgactccaaagatgagagatctggattttttccaattgtgtcttctatgacgg-ctct |
16788266 |
T |
|
| Q |
122 |
aaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtg |
221 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||| | | ||||||||||| ||||||||| || |||| ||||||| ||||| || | |||||| |||| |
|
|
| T |
16788267 |
aaaaccttcatcatgctgaaatcatctgaaacaaaaatccatattttcaggtcaaaatggtttcttactctttcattgttgtatactaattgagcaagtg |
16788366 |
T |
|
| Q |
222 |
ttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagca---tttagaagaaactctacaatcttctctttatc |
318 |
Q |
| |
|
|||||||||| | | | || | |||||||||||| |||||||||||||||| |||| ||| | |||||| |||||| |||||||| |||||||| |
|
|
| T |
16788367 |
ttgtttttccatattcacctaggccaacaatggaatagacagagagttcttctttgtcagtagtatgctttagaggaaactttacaatctgctctttata |
16788466 |
T |
|
| Q |
319 |
tttgtctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttg |
390 |
Q |
| |
|
| ||| |||||||||||| ||||||||||| |||| | ||||||||||| |||||| | |||||||| |
|
|
| T |
16788467 |
tatgtaccttccatatactacaggttcggtgacgacagaagtagtttggcgccactcatcagcacctcgttg |
16788538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 318
Target Start/End: Original strand, 16844135 - 16844334
Alignment:
| Q |
122 |
aaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtg |
221 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||| |||||||||||||| |||||| || |||||||| ||||||||| |||||| |||||| |||| |
|
|
| T |
16844135 |
aaaatcttcatcatactaaaatcatcagaaacacaaacccatattttcaaaggaaaatgagtatttaccctctcatcattgaagaccagttgagcaagtg |
16844234 |
T |
|
| Q |
222 |
ttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctctttatc |
318 |
Q |
| |
|
||| ||||| | ||| ||| ||||||||||||| ||||||||||| |||| |||| |||||| ||||||||||||| |||| ||| || ||||| |
|
|
| T |
16844235 |
ctgtctttccatatccaccatgaccaacaatggaatagacagagagtccttccttgtcaatagcatgccttagaagaaactcaacaaccttttccttatc |
16844334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 391
Target Start/End: Complemental strand, 18870470 - 18870294
Alignment:
| Q |
218 |
agtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctctt |
314 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| ||| |||||||||||||||||| ||||| |||| |||||||| | || |||||| |
|
|
| T |
18870470 |
agtgttgtttttccttgcccaccaacaccaacaatggaatagaaagagagttcttcactgtcaagagcatgacttagcagaaactcaaaaactttctctc |
18870371 |
T |
|
| Q |
315 |
tatctttgtctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttgg |
391 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| ||||| |||| | |||||||| ||||||| ||||||||||| |
|
|
| T |
18870370 |
tatcacgatctcttccataaacttttggttcagtgacgacagaagtagtttggcgattttcatcaactcctcgttgg |
18870294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 18794273 - 18794208
Alignment:
| Q |
326 |
cttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttgg |
391 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
18794273 |
cttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatctcctcgttgg |
18794208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 37687 - 38066
Alignment:
| Q |
20 |
aaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggact |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37687 |
aaataccttttgttttgcaaaatatcttgaaccttttttttccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggact |
37786 |
T |
|
| Q |
120 |
ctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37787 |
ctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgag |
37886 |
T |
|
| Q |
220 |
tgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcatttagaagaaactctacaatcttctctttatct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37887 |
tgttgtttttccttgtccgccaacaccaacaatggaacagacaaagagttcttcactttcgctggcatttagaagaaactctacaatctgttctttatct |
37986 |
T |
|
| Q |
320 |
ttgtctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttggtgctcctc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37987 |
ttgtctcttccatatactttcggttcggtgacagtagaaatagtttggcgccattcatcatctcctcgttgatgctcctc |
38066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 13049 - 13431
Alignment:
| Q |
20 |
aaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggact |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||| | | |||||||||||||||| |||||||||||||| |
|
|
| T |
13049 |
aaataccttttgttttgcaaaatttcttgaaccttttttcgcattgactctaaagaggagagatttggattttttccaatggtgtcttctatgatggact |
13148 |
T |
|
| Q |
120 |
ctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgag |
219 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| || |
|
|
| T |
13149 |
ctaaaaccttcatcatactgaaatcatcagaaacacacacccatattttcaagtcaaaatgtgtctttacactttcatcattgaagaccatttgagcaag |
13248 |
T |
|
| Q |
220 |
tgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctcttta |
316 |
Q |
| |
|
|||||||||||| | ||| || |||||||||||| ||||||||||||||||||| || || || | |||| |||||||||||||||| |||||| |
|
|
| T |
13249 |
tgttgtttttccatatccaccgtggccaacaatggaatagacagagagttcttcactctcactggcgtgccttagcagaaactctacaatctgttcttta |
13348 |
T |
|
| Q |
317 |
tctttgtctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttggtgctcctc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
13349 |
tctttgtctcttccatatactttcggttcggtgacagcagaagtagtttggcgccattcatcatctcgtcgttggcgctcctc |
13431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 8707 - 9029
Alignment:
| Q |
20 |
aaataccttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggact |
119 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||| | |||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
8707 |
aaatacctatttttttgcaaaatttcttgaaccttttgttgcattgactctaaagacgagagatgtggattttttccaatggtgttttctatgatggact |
8806 |
T |
|
| Q |
120 |
ctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgag |
219 |
Q |
| |
|
|||||| ||||||| | ||| |||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| || |
|
|
| T |
8807 |
ctaaaactttcatcgcattgatatcaccagaaacacacacccatattttcaagtcaaaatgtgtctttaccctttcatcattgaagactgtttgagcaag |
8906 |
T |
|
| Q |
220 |
tgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctcttta |
316 |
Q |
| |
|
|||||||||||| | ||| || |||||||| ||| |||||||||||||||||||||| | ||| | |||||||||||||||||| | ||||||| |
|
|
| T |
8907 |
tgttgtttttccatatccaccgtggccaacaatagaatagacagagagttcttcactgtcaccagcgtgccgtagaagaaactctacaatatgctcttta |
9006 |
T |
|
| Q |
317 |
tctttgtctcttccatatacttt |
339 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9007 |
tctttgtctcttccatatacttt |
9029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 391
Target Start/End: Original strand, 4885 - 5253
Alignment:
| Q |
26 |
cttttgttttgcaaaatatcttgaaccnnnnnnnnccttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaa |
125 |
Q |
| |
|
||||||||||||||||||| || |||| | |||| ||||||||| |||||||| | ||||||||| |||| |||||||||||||| |||| |
|
|
| T |
4885 |
cttttgttttgcaaaatatttttaaccttcttttgcattgattctaaagacgagagatctggattttttccatcggtggattctatgatggactgcaaaa |
4984 |
T |
|
| Q |
126 |
ttttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtgttgt |
225 |
Q |
| |
|
|||||||| | | ||||| || ||||||||||||||||||||||||| ||| ||||| | ||||||||| |||||| | |||| |||||| |||||||| |
|
|
| T |
4985 |
ctttcatcatattaaaatcctcagaaacacacacccatattttcaagttaaagtgtgtatctaccctttcctcattgaacaccacttgagcaagtgttgt |
5084 |
T |
|
| Q |
226 |
ttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctctttatctttg |
322 |
Q |
| |
|
||||||||| || |||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||| |||| | |||| | || |
|
|
| T |
5085 |
ttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcatgacttagaagaaactcaacaacttgctctctgtcacga |
5184 |
T |
|
| Q |
323 |
tctcttccatatactttcggttcggtgacagtagaaatcgtttggcgccattcatcatctcctcgttgg |
391 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
5185 |
tctcttccatatactttcggttcagtgacgacagaaaaagtttggcgccatttatcatctcctcgttgg |
5253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 63 - 391
Target Start/End: Original strand, 9602 - 9933
Alignment:
| Q |
63 |
ttgactctaaagacaagagatctaggttttttccaatggtgttttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacaccca |
162 |
Q |
| |
|
|||| ||||||||| |||||||| | ||||||||| |||| |||||||||||||| |||| |||||||| | | ||||| || |||||||||||||| |
|
|
| T |
9602 |
ttgattctaaagacgagagatctggattttttccatcggtggattctatgatggactgcaaaactttcatcatattaaaatcctcagaaacacacaccca |
9701 |
T |
|
| Q |
163 |
tattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagaca |
262 |
Q |
| |
|
||||||||||| ||| ||||| | |||||||||||||||| | |||| |||||| ||||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
9702 |
tattttcaagttaaagtgtgtatctaccctttcatcattgaacaccacttgagcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacn |
9801 |
T |
|
| Q |
263 |
gagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctctttatctttgtctcttccatatactttcggttcggtgacagtagaaa |
359 |
Q |
| |
|
|||||||||||||| || | ||| ||||||||||||| |||| | |||| | || |||||||||||||||||||||||| ||||| ||| |
|
|
| T |
9802 |
gagagttcttcactatccacaacatgacttagaagaaactcaacaacttgctctctgtcacggtctcttccatatactttcggttcagtgacgactgaag |
9901 |
T |
|
| Q |
360 |
tcgtttggcgccattcatcatctcctcgttgg |
391 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
9902 |
tagtttggcgccattcatcatctcctcgttgg |
9933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 106 - 336
Target Start/End: Complemental strand, 7053135 - 7052902
Alignment:
| Q |
106 |
ttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtag |
205 |
Q |
| |
|
|||||||||||| | || ||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||| || |||| |||||||| || ||| |
|
|
| T |
7053135 |
ttctatgatggagtgtaggattttaatcatgctgaaatcatctgaaacacaaacccatattttcaagtcaaaatgggtgcttacactttcatcgttatag |
7053036 |
T |
|
| Q |
206 |
accatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactcta |
302 |
Q |
| |
|
|||| |||||| |||||||||||||| | ||| | |||||||||| | ||| |||||||||||||||||| ||||||| | ||||||||||| | |
|
|
| T |
7053035 |
accaattgagcaagtgttgtttttccatatccactgtggccaacaatgggatagatagagagttcttcactgtcactagcatgcctcagaagaaactcga |
7052936 |
T |
|
| Q |
303 |
caatcttctctttatctttgtctcttccatatac |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7052935 |
caatcttctctttatctttgtctcttccatatac |
7052902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 106 - 338
Target Start/End: Complemental strand, 38939228 - 38938993
Alignment:
| Q |
106 |
ttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtag |
205 |
Q |
| |
|
|||||||||||| | || |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| || |||| ||||||| |||||| |
|
|
| T |
38939228 |
ttctatgatggagtgtaggattttcatcatgctgaaatcatctgaaacacaaacccatattttcaaatcaaaatgggtggttacgctttcattgttgtag |
38939129 |
T |
|
| Q |
206 |
accatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactcta |
302 |
Q |
| |
|
|||| |||||| |||||||||||||| | ||| || | ||||||||||||| |||||||||| |||||||||| | |||||| | |||||| |||| | |
|
|
| T |
38939128 |
accaattgagcaagtgttgtttttccatatccacctagaccaacaatggaatagacagagagatcttcactgttgttagcatgcctcagaagatactcaa |
38939029 |
T |
|
| Q |
303 |
caatcttctctttatctttgtctcttccatatactt |
338 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||| |
|
|
| T |
38939028 |
caatttgttctttatctttgtctcttccatatactt |
38938993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 106 - 337
Target Start/End: Original strand, 9436 - 9670
Alignment:
| Q |
106 |
ttctatgatggactctaaaattttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtag |
205 |
Q |
| |
|
|||||||||||| | || |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| || |||| ||||| || ||||| |
|
|
| T |
9436 |
ttctatgatggagtgtaggattttcatcatgctgaaatcatctgaaacacaaacccatattttcaaatcaaaatgggtggttacgctttcttcgttgtaa |
9535 |
T |
|
| Q |
206 |
accatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactcta |
302 |
Q |
| |
|
|||| |||||| |||||||||||||| | ||| || | |||||||||||| |||||||||| |||||||||| |||||||| | |||||| |||| | |
|
|
| T |
9536 |
accaattgagcaagtgttgtttttccatatccacctaggccaacaatggaatagacagagagatcttcactgttgctagcatgcctcagaagatactcaa |
9635 |
T |
|
| Q |
303 |
caatcttctctttatctttgtctcttccatatact |
337 |
Q |
| |
|
|||| || ||||||||||||||||||||| ||||| |
|
|
| T |
9636 |
caattttttctttatctttgtctcttccaaatact |
9670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 125 - 339
Target Start/End: Original strand, 13378402 - 13378619
Alignment:
| Q |
125 |
attttcatcaaactgaaatcatccgaaacacacacccatattttcaagtcaaaatgtgtttttaccctttcatcattgtagaccatttgagcgagtgttg |
224 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||| |||||||||||||||||||| || || |||| ||||||| ||||| |||| |||||| ||||||| |
|
|
| T |
13378402 |
attttcttcatactgaaatcatcagaaacacaaacccatattttcaagtcaaagtgggtgcttacgttttcatcgttgtacaccaattgagcaagtgttg |
13378501 |
T |
|
| Q |
225 |
tttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat---ttagaagaaactctacaatcttctctttatcttt |
321 |
Q |
| |
|
||||||| | ||| || | |||||||||||| ||||||||| ||||| |||| || |||| |||||||| |||| ||||| | ||||||||||| |
|
|
| T |
13378502 |
tttttccatatccacctaggccaacaatggaatagacagagatatcttctctgttacttgcatcccttagaagatactcaacaatttgttctttatcttt |
13378601 |
T |
|
| Q |
322 |
gtctcttccatatacttt |
339 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13378602 |
gtctcttccatatacttt |
13378619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 30476374 - 30476416
Alignment:
| Q |
186 |
ttaccctttcatcattgtagaccatttgagcgagtgttgtttt |
228 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
30476374 |
ttaccctatgatcattgtagaccatttgagcaagtgttgtttt |
30476416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 30712428 - 30712388
Alignment:
| Q |
290 |
agaagaaactctacaatcttctctttatctttgtctcttcc |
330 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
30712428 |
agaagaaactcgacaatcttttctttatcattgtctcttcc |
30712388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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