View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10148_low_16 (Length: 405)

Name: NF10148_low_16
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10148_low_16
NF10148_low_16
[»] chr4 (5 HSPs)
chr4 (16-395)||(36246461-36246840)
chr4 (275-318)||(52071519-52071562)
chr4 (272-317)||(27808566-27808611)
chr4 (242-311)||(31941926-31941995)
chr4 (242-311)||(32000885-32000954)
[»] chr2 (2 HSPs)
chr2 (170-343)||(2892171-2892344)
chr2 (217-343)||(37881267-37881393)
[»] chr3 (1 HSPs)
chr3 (269-317)||(44674752-44674800)
[»] chr8 (3 HSPs)
chr8 (269-312)||(39916909-39916952)
chr8 (236-319)||(11747427-11747510)
chr8 (278-318)||(7195699-7195739)
[»] chr1 (3 HSPs)
chr1 (279-322)||(27632581-27632624)
chr1 (275-318)||(45594286-45594329)
chr1 (279-317)||(17118247-17118285)
[»] chr5 (1 HSPs)
chr5 (275-312)||(19221386-19221423)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 36246840 - 36246461
Alignment:
Q  16 gtgtgagctaatttgttgtttgtgatcaatttggtgattctcttgtccattttgagaagagaagagtgatgaagccaactttagaatctcagggttcact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246840 gtgtgagctaatttgttgtttgtgatcaatttggtgattctcttgtccattttgagaagagaagagtgatgaagccaactttagaatctcagggttcact 36246741  T
Q  116 attgattgtgtaccaattagcctttggatgttcatttgtgatgatgaggtagaggcatagagagatgaatttaggatagaagataggtccaaaagatcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246740 attgattgtgtaccaattagcctttggatgttcatttgtgatgatgaggtagaggcatagagagatgaatttaggatagaagataggtccaaaagatcaa 36246641  T
Q  216 aacgtggattatgtgttacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctgg 315  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246640 aacgtggattatgtgtcacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctgg 36246541  T
Q  316 tagcctagaagcgattgaagaccacctacacaattcaaaactatgtagtttagtcacaaaaatcatatctattattctgt 395  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246540 tagcctagaagcaattgaagaccacctacacaattcaaaactatgtagtttagtcacaaaaatcatatctattattctgt 36246461  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 52071519 - 52071562
Alignment:
Q  275 gtgttccaataattcttgatttcattgtctgttcttcctggtag 318  Q
    ||||||||||||||||||||||||||||||||||  ||||||||    
T  52071519 gtgttccaataattcttgatttcattgtctgttcgccctggtag 52071562  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 27808611 - 27808566
Alignment:
Q  272 tgagtgttccaataattcttgatttcattgtctgttcttcctggta 317  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||    
T  27808611 tgagtgttccaataattctttatctcattatctgttcttcctggta 27808566  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 31941995 - 31941926
Alignment:
Q  242 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 311  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  31941995 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 31941926  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 32000954 - 32000885
Alignment:
Q  242 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 311  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  32000954 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 32000885  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 343
Target Start/End: Original strand, 2892171 - 2892344
Alignment:
Q  170 gcatagagagatgaatttaggatagaagataggtccaaaagatcaaaacgtggattatgtgttacaggatcaattcccattcttaagagtcttttcctaa 269  Q
    |||||||||||||||  ||| |||||||| |||||||| |  ||||  |  ||| |||||||||| ||||||||||||||||| || || ||||||||||    
T  2892171 gcatagagagatgaacatagaatagaagagaggtccaataagtcaagtctaggagtatgtgttactggatcaattcccattctcaaaagccttttcctaa 2892270  T
Q  270 tgtgagtgttccaataattcttgatttcattgtctgttcttcctggtagcctagaagcgattgaagaccaccta 343  Q
    |||| ||||||||||| || || ||||||||||| || ||||||||||  | ||| || |||| ||||||||||    
T  2892271 tgtgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatcgagatgcaattgcagaccaccta 2892344  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 37881267 - 37881393
Alignment:
Q  217 acgtggattatgtgttacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggt 316  Q
    ||||||| |||| || ||||||||||||||  |||  |  ||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| |||    
T  37881267 acgtggagtatgagtaacaggatcaattccacttcgaagtagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttccgggt 37881366  T
Q  317 agcctagaagcgattgaagaccaccta 343  Q
    |  |||| ||| || | ||||||||||    
T  37881367 aatctagcagctatagcagaccaccta 37881393  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 44674800 - 44674752
Alignment:
Q  269 atgtgagtgttccaataattcttgatttcattgtctgttcttcctggta 317  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  44674800 atgtgagtgttccagtaattcttgatctcattatctgttcttcctggta 44674752  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 39916952 - 39916909
Alignment:
Q  269 atgtgagtgttccaataattcttgatttcattgtctgttcttcc 312  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  39916952 atgtgagtgttccaatagttcttgatctcattgtctgttcttcc 39916909  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 11747510 - 11747427
Alignment:
Q  236 ggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggtagc 319  Q
    |||||||||||||| | || ||| | |||| | | ||| ||||||||  |||||||||| |||||||| |||||||||||||||    
T  11747510 ggatcaattcccatgcatatgagacgtttctttaagtgtgtgttccataaattcttgatctcattgtcagttcttcctggtagc 11747427  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 7195739 - 7195699
Alignment:
Q  278 ttccaataattcttgatttcattgtctgttcttcctggtag 318  Q
    ||||| || |||||||||||||||||||||| |||||||||    
T  7195739 ttccagtagttcttgatttcattgtctgttcgtcctggtag 7195699  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 27632581 - 27632624
Alignment:
Q  279 tccaataattcttgatttcattgtctgttcttcctggtagccta 322  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||    
T  27632581 tccaatagttcttgatttcattgtctgttcttcctggaagccta 27632624  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 45594286 - 45594329
Alignment:
Q  275 gtgttccaataattcttgatttcattgtctgttcttcctggtag 318  Q
    ||||||||||| ||||| || |||||||||||||||||||||||    
T  45594286 gtgttccaatagttcttaatctcattgtctgttcttcctggtag 45594329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 17118247 - 17118285
Alignment:
Q  279 tccaataattcttgatttcattgtctgttcttcctggta 317  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  17118247 tccagtaattctttatttcattgtctgttcttcctggta 17118285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 19221423 - 19221386
Alignment:
Q  275 gtgttccaataattcttgatttcattgtctgttcttcc 312  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  19221423 gtgttccaatgattctttatttcattgtctgttcttcc 19221386  T

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