View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_17 (Length: 388)
Name: NF10148_low_17
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 31437719 - 31438091
Alignment:
| Q |
1 |
ccaagttatgcttggaggagcatcatgtgtggcagagaagtactagaaaagggcagcagatgggtggtgggtaatggaaaaagcatcaaaatttggcatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
31437719 |
ccaagttatgcttggaggagcatcatgtgtggcagagaagtactagaaaagggcagcagatgggtggtgggtaatggaaaaagtatcgaaatttggcatg |
31437818 |
T |
|
| Q |
101 |
acaagtggctccccaaccaaacaaatttcaaagttcatggcccggtgcaaaatctcccctcaacagccactgttagtgatcttattgatgtagatacaaa |
200 |
Q |
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| T |
31437819 |
acaagtggctccccaaccaaacaaatttcaaagttcatggcccggtgcaaaatctcccctcaacagccactgttagtgatcttattgatgtagatacaaa |
31437918 |
T |
|
| Q |
201 |
gaattggaatagagatctcattgcatcatgtttcaatcagtttgaggcttcccaagtcacaaatatccaactatcctttagactcccagatgacagaatc |
300 |
Q |
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| T |
31437919 |
gaattggaatagagatctcattgcatcatgtttcaatcagtttgaggcttcccaagtcacaaatatccaactatcctttagactcccagatgacagaatc |
31438018 |
T |
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| Q |
301 |
atttggcattgggagaaagatggaatttactctgtgaagtcagcctaccaccttctaaccgaggaaaatgtga |
373 |
Q |
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| T |
31438019 |
atttggcattgggagaaagatggaatttactctgtgaagtcagcctaccaccttctaaccgaggaaaatgtga |
31438091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 31192724 - 31193086
Alignment:
| Q |
1 |
ccaagttatgcttggaggagcatcatgtgtggcagagaagtactagaaaagggcagcagatgggtggtgggtaatggaaaaagcatcaaaatttggcatg |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||||||||||||| |
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| T |
31192724 |
ccaagctatgcttggaggagcatcatgtgtggcagagaagtactagaaaagggcaccagatgggtggtgggtaat--acaaagtatcaaaatttggcatg |
31192821 |
T |
|
| Q |
101 |
acaagtggctccccaaccaaacaaatttcaaagttcatggcccggtgcaaaatctcccctcaacagccactgttagtgatcttattgatgtagatacaaa |
200 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||||| |
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| T |
31192822 |
acaactggctccctgaccaaacaaatttcaaagttcatggcccggtgcaaaatctcccctcaacaaccattgttagggatcttattgatttagatacaaa |
31192921 |
T |
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| Q |
201 |
gaattggaatagagatctcattgcatcatgtttcaatcagtttgaggcttcccaagtcacaaatatccaactatcctttagactcccagatgacagaatc |
300 |
Q |
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||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31192922 |
gaaatggaagagagacctcattgcgtcatggttcaaccagtttgaggcttcccaaatcacaaaaatccaactatcctttagactcccagatgacagaatc |
31193021 |
T |
|
| Q |
301 |
atttggcattgggagaaagatggaatttactctgtgaagtcagcctaccaccttctaaccgagga |
365 |
Q |
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|||||||||| ||||||||||||||| |||| ||||||| |||| |||||||| |||| |||||| |
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| T |
31193022 |
atttggcattaggagaaagatggaatctactatgtgaagacagcataccacctactaatcgagga |
31193086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 29176057 - 29176019
Alignment:
| Q |
297 |
aatcatttggcattgggagaaagatggaatttactctgt |
335 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| |
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| T |
29176057 |
aatcatttggcattgggagaaggatgggatttactctgt |
29176019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 13523237 - 13523199
Alignment:
| Q |
297 |
aatcatttggcattgggagaaagatggaatttactctgt |
335 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| |
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| T |
13523237 |
aatcatttggcattgggagaaggatgggatttactctgt |
13523199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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