View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10148_low_18 (Length: 379)
Name: NF10148_low_18
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 7175096 - 7175454
Alignment:
| Q |
1 |
ctgagatgagagatttccaggatttggagacagatttaaactgtgcgagggatttgactggaagcctgtagagaatgtcttcaacaagatcgaatggaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7175096 |
ctgagatgagagatttccaggatttggagacagatttaaactgtgcgagggatttgactggaagcctgtagagaatgtcttcaacaagatcgaatggaag |
7175195 |
T |
|
| Q |
101 |
agtgggattcgagcgccgactcttagtgacggttgttctcgatgtcatttgtgagcgtggcggcgca-----ggcacatggatgaatcaacgaatgaaat |
195 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7175196 |
agtgggattcgagcgccgactctttgtgacggttgttctcgataccatttgtgagcgtggcggcgcaggcctggcacatggatgaatcaacgaatgaaat |
7175295 |
T |
|
| Q |
196 |
ccaagtttatgaatcacagactgtttttggcgagttcgcctttgtttaattcttcttcatcaccgccgcttgcatcttctattgatttgaaaaataagtg |
295 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7175296 |
cgaagtttatgaatcacaga-----------gagttcgcctttgtttaattctacttcatcaccgccgcttgcatcttctattgatttgaaaaataagtg |
7175384 |
T |
|
| Q |
296 |
tgctgtgagtgacctcgataaatagagactaatgaaatcaaaaaactactttaccttctccctctcactt |
365 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7175385 |
tgctgtgattgacctcgataaatagagacgaatgaaatcaaaaaactactttaccttctccctctcactt |
7175454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 24722650 - 24722546
Alignment:
| Q |
3 |
gagatgagagatttccaggatttggagacagatttaaactgtgcgagggatttgactggaagcctgtagagaatgtcttcaacaagatcgaatggaagag |
102 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| |||| || || |||||| ||||| |||||||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
24722650 |
gagatgaatgatttccaggacttgcagacacatttgaattgcatgagggacttgaccggaagcctatagagaatttctaacacaagatcgaatggaagag |
24722551 |
T |
|
| Q |
103 |
tggga |
107 |
Q |
| |
|
||||| |
|
|
| T |
24722550 |
tggga |
24722546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University