View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_19 (Length: 375)
Name: NF10148_low_19
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 163 - 360
Target Start/End: Complemental strand, 28431442 - 28431245
Alignment:
| Q |
163 |
ctagtaagaaatcaataaacatcacacagactgctctagattattatacaaataagtttactcacatctgccacaaatggccacaatttggagagctgct |
262 |
Q |
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| T |
28431442 |
ctagtaagaaatcaataaacatcacacagactgctctagattattatacaaataagtttactcacatctgccacaaatggccacaatttggagagctgct |
28431343 |
T |
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| Q |
263 |
tgtttagccatttcacctgaataaaacccaaaaaacaataaatagagtttctaaatataaatttagtagcttcatttgatgcattgccaatgcctatg |
360 |
Q |
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| T |
28431342 |
tgtttagccatttcacctgaataaaacccaaaaaacaataaatagagtttctaaatataaatttagtagcttcatttgatgcattgccaatgcctatg |
28431245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 28431586 - 28431503
Alignment:
| Q |
19 |
gtctacccataatcaacagttctaatccactttctctcgttcaaactgaacaattggggtgtttgaagcaatgtaatccatacc |
102 |
Q |
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| T |
28431586 |
gtctacccataatcaacagttctaatccactttctctcgttcaaactgaacaattggggtgtttgaagcaatgtaatccatacc |
28431503 |
T |
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