View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_2 (Length: 612)
Name: NF10148_low_2
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 17 - 601
Target Start/End: Complemental strand, 35265055 - 35264470
Alignment:
| Q |
17 |
ccatgttagtgatcaattacagttgatgg-ttttagggcattcaaaaagaataaccaagaggttgaatatgctctttcctcatctgctaagaattaactg |
115 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35265055 |
ccatgttagtgatcaattacagttgatgggttttagggcattcaaaaagaataactaagaggttgaatatgctctttcctcatcttctaagaattaactg |
35264956 |
T |
|
| Q |
116 |
acttttgctaccttctaatccaagttagtgaagaatagttggtgtagtgttataggccataccatatatcaaaatccatggctagtagctaccaccttgg |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35264955 |
acttttgctatcttctaatccaagttagtgaagaatagttggtgtagtgttataggccataccatatatcaaaatccatggctagtagctaccaccttgg |
35264856 |
T |
|
| Q |
216 |
gtgcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaattctgatgtccttgtgacttagagaatttggaatcggttcctttctccat |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35264855 |
gttcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaattctgatgtccttgtgacttagggaatttggaatcggttcctttctccat |
35264756 |
T |
|
| Q |
316 |
atcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaagatccttcttctgtaa |
415 |
Q |
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| T |
35264755 |
atcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaagatccttcttctgtaa |
35264656 |
T |
|
| Q |
416 |
cgctgtggtttttgcttcctctgcagacttccnnnnnnncatcctatttgctgcggcaaccgaacctatttctttttgaatgcatcattttaccaannnn |
515 |
Q |
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| T |
35264655 |
cgctgtggtttttgcttcctctgcagacttcctttttttcatcctatttgctgcggcaaccgaacctatttctttttgaatgcatcattttaccaatttt |
35264556 |
T |
|
| Q |
516 |
nnnaaatatctgaccaatttgtttgttgctttacaactaaagatgcagttcttatttgaagacttgttgtctctacacatgttcat |
601 |
Q |
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| T |
35264555 |
tttaaatatctgaccaatttgtttgttactttacaactaaagatgcagttcttatttgaagacttgttgtctctacacatgttcat |
35264470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 201 - 409
Target Start/End: Complemental strand, 35272235 - 35272032
Alignment:
| Q |
201 |
tagctaccaccttgggtgcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaatt-ctgatgtccttgtgacttagagaatttggaat |
299 |
Q |
| |
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|||| ||||||| |||| |||||||||||| |||| | ||||| |||||||||||||||| |||||| | ||||||| ||||||||||| ||||||||| |
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| T |
35272235 |
tagcaaccacctcgggttcaaacccaaattcaaagaacgttcagtcaaacaagtgcttgcaaaaatttccgatgtccctgtgacttaga--atttggaat |
35272138 |
T |
|
| Q |
300 |
cggttcctttctccatatcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaa |
399 |
Q |
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| T |
35272137 |
ctgttcct----ccatattacttcagctaagtatcagcaacacatatcagtgctcttcacccaactatcttttgcatccaagttcagcttggagacccaa |
35272042 |
T |
|
| Q |
400 |
gatccttctt |
409 |
Q |
| |
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|||||||||| |
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| T |
35272041 |
gatccttctt |
35272032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 35272390 - 35272253
Alignment:
| Q |
16 |
accatgttagtgatcaattacagttgatggttt-tagggca-ttcaaaaagaataaccaagaggttgaatatgctctttcctcatctgctaagaattaac |
113 |
Q |
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||||||||||||||||||||| |||||||| || |||| || ||||||| || |||| |||||||||| | ||||||||||||||||||||||||||||| |
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| T |
35272390 |
accatgttagtgatcaattaccgttgatgggttctaggccaattcaaaaggagtaacaaagaggttgagtgtgctctttcctcatctgctaagaattaac |
35272291 |
T |
|
| Q |
114 |
tgacttttgctaccttctaatccaagttagtgaagaat |
151 |
Q |
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|||||||||||| ||||||||| ||||||||||||||| |
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| T |
35272290 |
tgacttttgctatcttctaatcaaagttagtgaagaat |
35272253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 397 - 599
Target Start/End: Complemental strand, 35272004 - 35271802
Alignment:
| Q |
397 |
caagatccttcttctgtaacgctgtggtttttgcttcctctgcagacttccnnnnnnncatcctatttgctgcggcaaccgaacctatttctttttgaat |
496 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||| ||||||||||| | |||||| ||||| |||||| |||||||| | ||||||||| |
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| T |
35272004 |
caagatccttcttctgtagcgctgcagtttttgcttaatctgcagactttccttttttgatcctaattgctttggcaacggaacctatatatttttgaat |
35271905 |
T |
|
| Q |
497 |
gcatcattttaccaannnnnnnaaatatctgaccaatttgtttgttgctttacaactaaagatgcagttcttatttgaagacttgttgtctctacacatg |
596 |
Q |
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||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | ||||||||||| |||||||||| | |||||||||| |
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| T |
35271904 |
gcatcattttaccaaattttttaaatattagaccaatttgtttgttactttacaactaaagctatagttcttattttaagacttgttatttctacacatg |
35271805 |
T |
|
| Q |
597 |
ttc |
599 |
Q |
| |
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||| |
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|
| T |
35271804 |
ttc |
35271802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 572
Target Start/End: Complemental strand, 35148504 - 35148463
Alignment:
| Q |
531 |
aatttgtttgttgctttacaactaaagatgcagttcttattt |
572 |
Q |
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|||||||||||||| ||||||||||||| ||||||| ||||| |
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| T |
35148504 |
aatttgtttgttgccttacaactaaagacgcagttcctattt |
35148463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 35209480 - 35209432
Alignment:
| Q |
313 |
catatcacttcagctaagtatcagcaacacataaccctgctcttcactc |
361 |
Q |
| |
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|||||||||||||||||||||||||| || || || |||||||||||| |
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| T |
35209480 |
catatcacttcagctaagtatcagcagcatgtatccatgctcttcactc |
35209432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 269 - 601
Target Start/End: Complemental strand, 36778578 - 36778252
Alignment:
| Q |
269 |
tgatgtccttgtgacttagagaatttggaatcggttcctttctccatatcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatc |
368 |
Q |
| |
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|||||||| ||||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| |||||||| || |||||||||| |||||||| |
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| T |
36778578 |
tgatgtccctgtgacttaga--atttggaatctgttcct----ccatatcactttacctaagtatcagaaacacatatccatgctcttcacccaactatc |
36778485 |
T |
|
| Q |
369 |
ttttgcatccaacttcagcttggagcaccaagatccttcttctgtaacgctgtggtttttgcttcctctgcagacttccnnnnnnncatcctatttgctg |
468 |
Q |
| |
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|||||||||||| ||||||||||||| ||| ||||||||||||||| || || | ||||||||| ||||||||||| | |||||| |||||| |
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|
| T |
36778484 |
ttttgcatccaagttcagcttggagccccaggatccttcttctgtagcgttgcagcttttgcttcatctgcagactttccttttttgatcctaattgctg |
36778385 |
T |
|
| Q |
469 |
cggcaaccgaacctatttctttttgaatgcatcattttaccaannnnnnnaaatatctgaccaatttgtttgttgctttacaactaaagatgcagttctt |
568 |
Q |
| |
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|| ||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| || |||||| |
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| T |
36778384 |
tggtaaccgtacctatttatttttgaatgcatcattttaccaaattttttaaatatcagaccaatttgtttgttactttacaactaaagctgtggttctt |
36778285 |
T |
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| Q |
569 |
atttgaagacttgttgtctctacacatgttcat |
601 |
Q |
| |
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|||| |||||||||| | |||||| |||||||| |
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|
| T |
36778284 |
attttaagacttgttatttctacatatgttcat |
36778252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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