View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_20 (Length: 374)
Name: NF10148_low_20
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 42154987 - 42154648
Alignment:
| Q |
1 |
ggtatgctagagtatttgattcttccaagctctatttatgagataaattacaatacctttataattactcgatacttggtatttttctatctttagcaat |
100 |
Q |
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| T |
42154987 |
ggtatgctagagtatttgat-cttccaagctctatttatgagataaattacaatacctttataattacttgatacttagtatttttctatctttagcaat |
42154889 |
T |
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| Q |
101 |
tcaattggtcttgtctaaatatcatagtcaattcaaggtgcacaaattttcttcttttgtaa--ttta-taaccaaaaatatgaaatggtgtcaatcttt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||||| |||||||||||||||| |
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| T |
42154888 |
tcaattggtcttgtctaaatatcatagtcaattcaaggtgcacaaattttcttctttttaaaagttcacaaaccaaaaatatg-aatggtgtcaatcttt |
42154790 |
T |
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| Q |
198 |
actagtccattataatttataaccatactcagaagattaattaataccttatataggtgattacttatttgtaattactatagtactattatgcatcact |
297 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42154789 |
tctagcccattataatttataaccatactcagaagattaattaataccttatataggtgattacttatttgtaatta---------------------ct |
42154711 |
T |
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| Q |
298 |
aataacaaaattgactaaaggaaattcttgaagattgaaagggaatagga-taccttgtttct |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42154710 |
aataacaaaattgactaaaggaaattcttgaagattgaaagggaataggattaccttgtttct |
42154648 |
T |
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