View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_27 (Length: 337)
Name: NF10148_low_27
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 6383735 - 6383630
Alignment:
| Q |
201 |
tttgtaaaatggatgacaatcaatagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgttcagttcacccc |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6383735 |
tttgtaaaatggatgacaatcattagattatggaggtccatcttaactatcatggatgttttacaccatatttttccaaatttgttgttcagttcacccc |
6383636 |
T |
|
| Q |
301 |
tttgtt |
306 |
Q |
| |
|
|||||| |
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|
| T |
6383635 |
tttgtt |
6383630 |
T |
|
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Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 27657924 - 27657820
Alignment:
| Q |
201 |
tttgtaaaatggatgacaatcaatagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgttcagttcacccc |
300 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27657924 |
tttgtaaaatggatg-caatcattagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgttcagttcacccc |
27657826 |
T |
|
| Q |
301 |
tttgtt |
306 |
Q |
| |
|
|||||| |
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|
| T |
27657825 |
tttgtt |
27657820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 40550944 - 40551049
Alignment:
| Q |
201 |
tttgtaaaatggatgacaatcaatagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgttcagttcacccc |
300 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40550944 |
tttgtaaaatggatggcaaccattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttttaaatttgttgttcagttcacccc |
40551043 |
T |
|
| Q |
301 |
tttgtt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
40551044 |
tttgtt |
40551049 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 45274323 - 45274429
Alignment:
| Q |
201 |
tttgtaaaatggatgacaatcaatagattatgaaggtccatcttaactatcatggatgttttacaccata-ttttttcaaatttgttgttcagttcaccc |
299 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
45274323 |
tttgtaaaatggatgacaatcattagattatgaaggtccatcttaactatcattgatgttttacaccatatttttttcaaatttgttgttgagttcaccc |
45274422 |
T |
|
| Q |
300 |
ctttgtt |
306 |
Q |
| |
|
||||||| |
|
|
| T |
45274423 |
ctttgtt |
45274429 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 46211331 - 46211226
Alignment:
| Q |
201 |
tttgtaaaatggatgacaatcaatagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgttcagttcacccc |
300 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46211331 |
tttgtaaaatggatggtaaccattagattatgaaggtccatcttaactattatggatgttttacaccatattttttcaaatttgttgttcagttcacccc |
46211232 |
T |
|
| Q |
301 |
tttgtt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
46211231 |
tttgtt |
46211226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 47138829 - 47138934
Alignment:
| Q |
201 |
tttgtaaaatggatgacaatcaatagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgttcagttcacccc |
300 |
Q |
| |
|
||||||||||| ||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
47138829 |
tttgtaaaatgaatggcaaccattagattatgaaggttcatcttaactatcatggatgttttacaccatatttttttaaatttgttgttcagttcacccc |
47138928 |
T |
|
| Q |
301 |
tttgtt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
47138929 |
tttgtt |
47138934 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 37626444 - 37626340
Alignment:
| Q |
201 |
tttgtaaaatggatgacaatcaatagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgttcagttcacccc |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
37626444 |
tttgtaaaatggatgacaatcattagattatgaaggtctatcttaactattatggatgttttacaccatatttttccaaatttgttgttcaattcacccc |
37626345 |
T |
|
| Q |
301 |
tttgt |
305 |
Q |
| |
|
||||| |
|
|
| T |
37626344 |
tttgt |
37626340 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 12654552 - 12654471
Alignment:
| Q |
224 |
tagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgttcagttcacccctttgtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
12654552 |
tagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgtt-agttcacccctttgtt |
12654471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 205 - 306
Target Start/End: Original strand, 40813793 - 40813893
Alignment:
| Q |
205 |
taaaatggatgacaatcaatagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgttcagttcacccctttg |
304 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40813793 |
taaaatggatggcaaccattagattatgaaggtc-atcttaactattatggatgttttacaccatatttttttaaatttgttgttcagttcacccctttg |
40813891 |
T |
|
| Q |
305 |
tt |
306 |
Q |
| |
|
|| |
|
|
| T |
40813892 |
tt |
40813893 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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