View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10148_low_29 (Length: 326)

Name: NF10148_low_29
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10148_low_29
NF10148_low_29
[»] chr7 (4 HSPs)
chr7 (45-307)||(3928526-3928788)
chr7 (48-260)||(3929925-3930137)
chr7 (56-226)||(21317534-21317704)
chr7 (1-53)||(3928818-3928870)
[»] scaffold0197 (1 HSPs)
scaffold0197 (56-226)||(30971-31141)
[»] chr8 (8 HSPs)
chr8 (48-253)||(43479645-43479850)
chr8 (56-237)||(38799455-38799636)
chr8 (56-237)||(38821881-38822062)
chr8 (179-253)||(38807079-38807153)
chr8 (56-226)||(41943904-41944074)
chr8 (140-217)||(26592212-26592289)
chr8 (131-217)||(25865735-25865821)
chr8 (131-217)||(44343990-44344076)
[»] chr5 (7 HSPs)
chr5 (56-254)||(12546969-12547167)
chr5 (56-254)||(12531452-12531650)
chr5 (109-213)||(9866668-9866772)
chr5 (107-254)||(9894654-9894800)
chr5 (133-219)||(9870018-9870104)
chr5 (80-198)||(38735501-38735619)
chr5 (173-210)||(12538675-12538712)
[»] chr2 (3 HSPs)
chr2 (48-254)||(13576300-13576506)
chr2 (146-225)||(34562651-34562730)
chr2 (146-225)||(34571445-34571524)
[»] chr4 (2 HSPs)
chr4 (56-252)||(24860506-24860702)
chr4 (80-192)||(53290720-53290832)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 45 - 307
Target Start/End: Complemental strand, 3928788 - 3928526
Alignment:
Q  45 tcaaaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatct 144  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  3928788 tcaaaagattggttcatgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtat 3928689  T
Q  145 tgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgag 244  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3928688 tgttggtttgtttgaagatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgag 3928589  T
Q  245 agagcttagaagatttcataaatgttgttctgttaaggtttggttcatctgttatgaatctta 307  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3928588 agagcttagaagatttcataaatgttattctgttaaggtttggttcatctgttatgaatctta 3928526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 48 - 260
Target Start/End: Complemental strand, 3930137 - 3929925
Alignment:
Q  48 aaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgt 147  Q
    |||||||||||| |||||||||||| |||||||||||||||||  |||| ||||  || |||||||||||| ||||||||   |||||||||||||||||    
T  3930137 aaagattggttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgt 3930038  T
Q  148 tggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagaga 247  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||| | ||||||||  |||| ||     
T  3930037 tggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgcaagaagaatcagaggcgaaagg 3929938  T
Q  248 gcttagaagattt 260  Q
    |||||||||||||    
T  3929937 gcttagaagattt 3929925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 21317534 - 21317704
Alignment:
Q  56 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 155  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||||| ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  21317534 gttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgt 21317633  T
Q  156 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgca 226  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  21317634 ttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgca 21317704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3928870 - 3928818
Alignment:
Q  1 agattcagaccaggaacagtcacattgcgtgaaatcagaaagtatcaaaagat 53  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  3928870 agattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagat 3928818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 30971 - 31141
Alignment:
Q  56 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 155  Q
    |||| |||||||||||| |||||||||||  ||||| ||||||||| ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  30971 gttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 31070  T
Q  156 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgca 226  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  31071 ttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgca 31141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 48 - 253
Target Start/End: Complemental strand, 43479850 - 43479645
Alignment:
Q  48 aaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgt 147  Q
    |||||||||||   ||||||||||| |||||||||||||||||| | |||||||  ||||||||||||||| ||||||||  ||||||||| ||||||||    
T  43479850 aaagattggttagggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgt 43479751  T
Q  148 tggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagaga 247  Q
    |||||||||||||||||| || ||||| ||||||||||||||||| ||||| ||| |||||||||||||| |||||||| | ||||| ||  |||||||     
T  43479750 tggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgagagg 43479651  T
Q  248 gcttag 253  Q
    ||||||    
T  43479650 gcttag 43479645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 38799455 - 38799636
Alignment:
Q  56 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 155  Q
    |||| |||||| ||||| |||||||| || |||||  ||||||||| |||||| ||||| ||| ||||||||   |||||||| ||  | |||||| | |    
T  38799455 gttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctct 38799554  T
Q  156 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcag 237  Q
    ||||||| || || |||||||| |||||||||||||||||||| ||  |||||||||| ||| | |||||| | ||||||||    
T  38799555 ttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcag 38799636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 38822062 - 38821881
Alignment:
Q  56 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 155  Q
    |||| |||||| ||||| |||||||| || |||||  ||||||||| |||||| ||||| ||| ||||||||   |||||||| ||  | |||||| | |    
T  38822062 gttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctct 38821963  T
Q  156 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcag 237  Q
    ||||||| || || |||||||| |||||||||||||||||||| ||  |||||||||| ||| | |||||| | ||||||||    
T  38821962 ttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcag 38821881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 38807079 - 38807153
Alignment:
Q  179 attcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttag 253  Q
    |||||||||||||||||||||||  |||||||||| ||| |||||||| | ||||||||  ||||||| ||||||    
T  38807079 attcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgagagggcttag 38807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 41943904 - 41944074
Alignment:
Q  56 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 155  Q
    |||| |||||| ||||| |||||||| || |||||| ||||||||| |   ||||||  |||  |||| |||   || ||||| ||||| ||||| ||||    
T  41943904 gttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgt 41944003  T
Q  156 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgca 226  Q
    |||| ||||| ||| | ||||| |||||||||||||| ||||| ||| |||| ||||| ||| ||||||||    
T  41944004 ttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgca 41944074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 26592212 - 26592289
Alignment:
Q  140 tatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt 217  Q
    ||||||||||| |||||||| ||||| || || || ||||||||||||||| | ||||||||  ||||||||||||||    
T  26592212 tatcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatatt 26592289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 25865735 - 25865821
Alignment:
Q  131 gctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt 217  Q
    ||||| || |||||||| || |||||||| ||||| ||| | ||||| |||||||||||||| || || ||| |||| |||||||||    
T  25865735 gctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatatt 25865821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 44343990 - 44344076
Alignment:
Q  131 gctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt 217  Q
    ||||| || ||||| || || |||||||| ||||| ||| | |||||||||||||||||||| || || ||| |||| |||||||||    
T  44343990 gctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatatt 44344076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 56 - 254
Target Start/End: Complemental strand, 12547167 - 12546969
Alignment:
Q  56 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 155  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||| | ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  12547167 gttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 12547068  T
Q  156 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttaga 254  Q
    |||||||||| ||||| ||||| |||||||||||||| ||||||||  |||||||||||||| |||||||  ||||||| ||  |||||||||||||||    
T  12547067 ttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcgcagaattagaggcgagagagcttaga 12546969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 56 - 254
Target Start/End: Original strand, 12531452 - 12531650
Alignment:
Q  56 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 155  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||| | ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  12531452 gttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 12531551  T
Q  156 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttaga 254  Q
    |||||||||| ||||| ||||| |||||||||||||| ||||||||  |||||||||||||| |||| ||  ||||||||||  ||||||| |||||||    
T  12531552 ttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttaga 12531650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 9866772 - 9866668
Alignment:
Q  109 tgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcct 208  Q
    |||||||||| ||||||||   ||| |||  |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||    
T  9866772 tgtttctgctcttcaagaagctgctaaagactatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcct 9866673  T
Q  209 aagga 213  Q
     ||||    
T  9866672 gagga 9866668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 9894654 - 9894800
Alignment:
Q  107 gctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgc 206  Q
    |||||||||||| |||||||| | | |||||| | | ||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||||||| ||     
T  9894654 gctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgagttactattatgg 9894753  T
Q  207 ctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttaga 254  Q
    | ||||||||| |||||||  ||||||||||  ||||||| |||||||    
T  9894754 c-aaggatattgaacttgctcgcagaatcagaggcgagagggcttaga 9894800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 9870018 - 9870104
Alignment:
Q  133 tgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaa 219  Q
    |||||| ||| |||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  9870018 tgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatattaa 9870104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 38735501 - 38735619
Alignment:
Q  80 aaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgcta 179  Q
    ||||| |||||| | ||||| | || ||||||||||||| ||||| || ||  |||||  |||||||||||||||||||||||||| || |||||| |||    
T  38735501 aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta 38735600  T
Q  180 ttcatgctaagagagttac 198  Q
    ||||||||||||| |||||    
T  38735601 ttcatgctaagagggttac 38735619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 12538675 - 12538712
Alignment:
Q  173 tgtgctattcatgctaagagagttactattgtgcctaa 210  Q
    |||||||||||||||||||||||||||||  |||||||    
T  12538675 tgtgctattcatgctaagagagttactatcatgcctaa 12538712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 48 - 254
Target Start/End: Original strand, 13576300 - 13576506
Alignment:
Q  48 aaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgt 147  Q
    ||||||||||||  ||||| ||||| ||||||||||| |||||| | || || | ||| |||||||||||| ||||||||   |||||||| ||||||||    
T  13576300 aaagattggttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgt 13576399  T
Q  148 tggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagaga 247  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||  | ||||||||  |||| ||     
T  13576400 tggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagg 13576499  T
Q  248 gcttaga 254  Q
    |||||||    
T  13576500 gcttaga 13576506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 34562730 - 34562651
Alignment:
Q  146 gttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgc 225  Q
    |||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  34562730 gttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgc 34562651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 34571524 - 34571445
Alignment:
Q  146 gttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgc 225  Q
    |||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  34571524 gttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgc 34571445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 56 - 252
Target Start/End: Original strand, 24860506 - 24860702
Alignment:
Q  56 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 155  Q
    |||| |||||||||||| ||||||||||| |||||| | |||||||  ||||||||||||||| ||||||||   |||||||| ||||| |||||  | |    
T  24860506 gttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactct 24860605  T
Q  156 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagctta 252  Q
    |||||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||||||| |||| ||  ||||||||||  ||||||| |||||    
T  24860606 ttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta 24860702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 53290720 - 53290832
Alignment:
Q  80 aaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgcta 179  Q
    ||||| |||||| | ||||| | || || |||||||||| ||||| || ||| |||||| |||||||||||||||||||||||||| || |||||| | |    
T  53290720 aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca 53290819  T
Q  180 ttcatgctaagag 192  Q
    |||||||||||||    
T  53290820 ttcatgctaagag 53290832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University