View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_31 (Length: 311)
Name: NF10148_low_31
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_31 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 19095078 - 19094770
Alignment:
| Q |
1 |
aacaagaccttgaaacatgtcaaaccattcaaactagacaatttcgtggtcgtgtgttatacttttgacaagaatattaaaagtgatttcttagcatata |
100 |
Q |
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| T |
19095078 |
aacaagaccttgaaacatgtcaaatcattcaaactagacaatttcgtggtcgtgt--tatacttttgacaagaatattaaaagtgatttcttaggatata |
19094981 |
T |
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| Q |
101 |
taatcactatgaatgtttcgatgaggcgaaatgggataaggaaagaagaattatagatgagtcagccacaggaagaagcgtgatgcatgctacaagccac |
200 |
Q |
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| T |
19094980 |
taatcactatgaacgtttcgatgaggcaaaatgggataaggaaagaagaattatagatgagtcagccactagaagaagagtgatgcatgctacaagccac |
19094881 |
T |
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| Q |
201 |
atgttgtgcaatcagaaggggattcaagatggacaaccaatacttaaaatgcaaagcgtgttatgagccacgcatcatgccatcatgaagagagatgaag |
300 |
Q |
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| T |
19094880 |
atgttgtgcaatcagaaggggattcaagatggacaaccaatacttaaaatgcaaagcgtgttatgagccacgcatcatgccatcatgaagagagatgaag |
19094781 |
T |
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| Q |
301 |
tggttcgctat |
311 |
Q |
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| T |
19094780 |
tggttcgctat |
19094770 |
T |
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Back To:
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 9830062 - 9830135
Alignment:
| Q |
116 |
tttcgatgaggcgaaatgggataaggaaagaagaattatagatgagtcagccacaggaagaagcgtgatgcatg |
189 |
Q |
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| T |
9830062 |
tttcggtgaggcgaaatgcgataaggaatgaagcatcacaaatgagtcaaccattggaagaagcgtgatgcatg |
9830135 |
T |
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