View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_32 (Length: 307)
Name: NF10148_low_32
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 8586174 - 8586465
Alignment:
| Q |
1 |
tgtatcatttcttgaatcagcattagcgtatctgacaaatattattatattctaaaccttttttgaaacgaaaaatttaccttatatactttaagtgtca |
100 |
Q |
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| T |
8586174 |
tgtatcatttcttgaatcagcattagcatatctgacaaatattattatattctaaaccttttttgaaacgaaaaatttaccttatatactttaagtgtca |
8586273 |
T |
|
| Q |
101 |
tcatttcttaagaatcaattaaaaagttcagcagtaacagaataggacttaaagcatatgtagcactaacacttcatatcgaaagattgtatttgatgca |
200 |
Q |
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| T |
8586274 |
tcatttcctaagaatcaattaaaaagttcagcagtaacagaataggacttgaaggctatgtagcactaacacttcatatcgaaagattgtatttgataca |
8586373 |
T |
|
| Q |
201 |
catgggttttctaaaccgacccataaattgcttacattttcttaaactattattggtgtctacgtttttgtgttagtgtcatgacacgttac |
292 |
Q |
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| T |
8586374 |
catgggttttctaaaccgacccataaattgcttacattttcttaaactattattggtgtctatgtttttgtgttagtgtcatgacacgttac |
8586465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 8594608 - 8594339
Alignment:
| Q |
1 |
tgtatcatttcttgaa-tcagcattagcgtatctgacaaatattattatattctaaaccttttttgaaacga-aaaatttaccttatatactttaagtgt |
98 |
Q |
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|||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||| |
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| T |
8594608 |
tgtatcattttttgaaatcagcattagcatatctgacaaatattat---attctaaacctttttttaaaaggcaaaatttaccttatatactttaagtgt |
8594512 |
T |
|
| Q |
99 |
catcatttcttaagaatcaattaaaaagttcagcagtaacagaataggacttaaagcatatgtagcactaacacttcatatcgaaagattgtatttgatg |
198 |
Q |
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| T |
8594511 |
catca--------------attaaaaagttcagcggaaacagaatatgactcgaaggctatatagcactaacacttcagatcgaaagattgtatttgaca |
8594426 |
T |
|
| Q |
199 |
cacatgggttttct-aaaccgacccataaattgcttacattttcttaaactattattggtgtctacgtttttgtgttagtgtcatgac |
285 |
Q |
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| T |
8594425 |
cacgtgggtttcctaaaaccgacccataaattgcttacattttcttaaattattattggtatcta-ttttttgtgttagtgtcatgac |
8594339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 94 - 289
Target Start/End: Original strand, 8451223 - 8451424
Alignment:
| Q |
94 |
agtgtcatcatttcttaagaatcaattaaaaagttcagcagtaacagaataggacttaaagcatatgtagcactaacacttcatatcgaaagattgtatt |
193 |
Q |
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| T |
8451223 |
agtgtcataattttctaagaatcaatttaaaagttcagcagtaccagaataggacttgaaggcgatgtagcactaacacttcagatcgaaagattgtatt |
8451322 |
T |
|
| Q |
194 |
tgatgcacatgggttttct-aaaccgac-----ccataaattgcttacattttcttaaactattattggtgtctacgtttttgtgttagtgtcatgacac |
287 |
Q |
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| T |
8451323 |
tgacacgcgtgggtttgctaaaaccgacccataccataaattgcttacattttcttaaattattattggtgtctatgtttttgtgttagtgtcatgacac |
8451422 |
T |
|
| Q |
288 |
gt |
289 |
Q |
| |
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|| |
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|
| T |
8451423 |
gt |
8451424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 27035563 - 27035535
Alignment:
| Q |
235 |
cattttcttaaactattattggtgtctac |
263 |
Q |
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| T |
27035563 |
cattttcttaaactattattggtgtctac |
27035535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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