View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_33 (Length: 299)
Name: NF10148_low_33
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 36149362 - 36149632
Alignment:
| Q |
20 |
cacgtgtgctacttcttgtccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaact |
119 |
Q |
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| T |
36149362 |
cacgtgtgctacttcttgtccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaact |
36149461 |
T |
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| Q |
120 |
tgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgtt |
219 |
Q |
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| T |
36149462 |
tgagattccattgtgtgtggaattacttcgacaccatgcagtggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgtt |
36149561 |
T |
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| Q |
220 |
gtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgtgtaattgacaagttcttcttct |
290 |
Q |
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| T |
36149562 |
gtttaggagagtgttcttcttctttgtcatctattttgagtgcacatgtgtaattgacaagtgcttcttct |
36149632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 36083446 - 36083533
Alignment:
| Q |
184 |
gagaatcattttccatcatgggaacttcttcttgt---tgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
268 |
Q |
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| T |
36083446 |
gagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgt |
36083533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 268
Target Start/End: Original strand, 36149636 - 36149799
Alignment:
| Q |
108 |
tctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtg------aaggaggcggagaatcattttccatca |
201 |
Q |
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| T |
36149636 |
tctttgtgaatttgagcttccatgatgtgtggaatcacttccacttcttgcagctgtggcggtggtggtggtgaaggaggcggagaatcactttccttca |
36149735 |
T |
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| Q |
202 |
tgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
268 |
Q |
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| T |
36149736 |
tttgcacttctttttctagcttgggagag---tcttcttctttctcatctattttgagtgcacatgt |
36149799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 36149759 - 36149822
Alignment:
| Q |
48 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
111 |
Q |
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| T |
36149759 |
ggagagtcttcttctttctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt |
36149822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 36083473 - 36083556
Alignment:
| Q |
31 |
cttcttgtccttgattaggagagtg---ttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
111 |
Q |
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| T |
36083473 |
cttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttctt |
36083556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 31 - 268
Target Start/End: Complemental strand, 26527621 - 26527381
Alignment:
| Q |
31 |
cttcttgtccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccat |
130 |
Q |
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| T |
26527621 |
cttcttgtccttgcttaggagactgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacatgagcttccat |
26527522 |
T |
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| Q |
131 |
ggtgtgtggaattacttcgacaccatgcagtggtggcg------gcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgttta |
224 |
Q |
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| T |
26527521 |
ggtgtggggaatcacttccacttcatacagcagtggcggtggtagtggtgaaggaggcggaaaatcactttcattcatgtgcacttctttttctagcttg |
26527422 |
T |
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| Q |
225 |
ggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
268 |
Q |
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| T |
26527421 |
ggagagtg---ttcttctatctcatctattttgagtgcacatgt |
26527381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 26527421 - 26527358
Alignment:
| Q |
48 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
111 |
Q |
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| T |
26527421 |
ggagagtgttcttctatctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt |
26527358 |
T |
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