View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_36 (Length: 292)
Name: NF10148_low_36
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39228023 - 39227740
Alignment:
| Q |
1 |
tacaataatgagttcaattgttcgctccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39228023 |
tacaataatgagttcaattgttcactccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattc |
39227924 |
T |
|
| Q |
101 |
cttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227923 |
cttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaatct |
39227824 |
T |
|
| Q |
201 |
tacacaccttttgttaggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatct |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227823 |
tacacaccttttgttaggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatct |
39227740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 25547222 - 25546939
Alignment:
| Q |
1 |
tacaataatgagttcaattgttcgctccctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattc |
100 |
Q |
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||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547222 |
tacaacaatgagttcaattgttcactacctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattc |
25547123 |
T |
|
| Q |
101 |
cttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547122 |
cttcaaaatatggtaacatgttgcagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaatcttactaatct |
25547023 |
T |
|
| Q |
201 |
tacacaccttttgttaggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttagttcatct |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25547022 |
tacacaccttttgttaggttattacaatgagtttgatggtgaaattccacctcattttggtaaccttgttaatttacttcatct |
25546939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 16733310 - 16733375
Alignment:
| Q |
124 |
cagcttaactatttgtctcttgcaggtaatgatttgagaggtttcataccttttgagcttggaaat |
189 |
Q |
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|||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||||||||||| |
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| T |
16733310 |
cagcttaattttttgtctcttgctggaaatgatttgagtggttttttacctagtgagcttggaaat |
16733375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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