View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10148_low_4 (Length: 514)

Name: NF10148_low_4
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10148_low_4
NF10148_low_4
[»] chr3 (4 HSPs)
chr3 (180-501)||(8578099-8578420)
chr3 (51-162)||(8577996-8578107)
chr3 (55-161)||(8597120-8597223)
chr3 (93-264)||(8554290-8554461)
[»] chr7 (2 HSPs)
chr7 (310-501)||(33443344-33443531)
chr7 (129-212)||(33443782-33443863)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 180 - 501
Target Start/End: Original strand, 8578099 - 8578420
Alignment:
Q  180 ttcaagaaccgttttatctccaatatcatgttcattatccatcaccataaaaacatatcttcgatttctctcataatattgttttgaatacttgccaatg 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8578099 ttcaagaaccgttttatctccaatatcatgttcattatccatcaccataaaaacatatcttcaatttctctcataatattgttttgaatacttgccaatg 8578198  T
Q  280 tgtgtgctttgcatttaataatcgtgatttttaataataggctacttatgaaaactttgaagattggtgtgaggaatataatagattatactcttcggag 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578199 tgtgtgctttgcatttaataatcgtgatttttaataataggctacttatgaaaactttgaagattggtgtgaggaatataatagattatactcttcggag 8578298  T
Q  380 aaagaaagagaagcgctataggtacaaagtgtttaagaaaaggtatgcaatgatcacacaccataatcaaatcggaaattctggttccaaactcggcttc 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578299 aaagaaagagaagcgctataggtacaaagtgtttaagaaaaggtatgcaatgatcacacaccataatcaaatcggaaattctggttccaaactcggcttc 8578398  T
Q  480 aatgattttgccgatctatcct 501  Q
    ||||||||||||||||||||||    
T  8578399 aatgattttgccgatctatcct 8578420  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 8577996 - 8578107
Alignment:
Q  51 tctctgatcaaccttcccactagttgttaaatttcttaaaatttgcaaatcaatggagcattaaaaggaaaaatcgacgcaaccaaaatgcgagcctaag 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8577996 tctctgatcaaccttcccactagttgttaaatttcttaaaatttgcaaatcaatggagcattaaaaggaaaaatcgacgcaaccaaaatgcgagcctaag 8578095  T
Q  151 agcttcaagaac 162  Q
    ||||||||||||    
T  8578096 agcttcaagaac 8578107  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 8597223 - 8597120
Alignment:
Q  55 tgatcaaccttcccactagttgttaaatttcttaaaatttgcaaatcaatgg-agcattaaaaggaaaaatcgacgcaaccaaaatgcgagcctaagagc 153  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    ||||||||||||||||||||||||| ||||| |||||    
T  8597223 tgatcaaccttcccactagctgttaaatttcttaaagtttgcaaatcaatggaagcatt----ggaaaaatcgacgcaaccaaaatgcaagcctcagagc 8597128  T
Q  154 ttcaagaa 161  Q
    ||||||||    
T  8597127 ttcaagaa 8597120  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 264
Target Start/End: Complemental strand, 8554461 - 8554290
Alignment:
Q  93 ttgcaaatcaatgga-gcattaaaaggaaaaatcgacgcaaccaaaatgcgagcctaagagcttcaagaactgctatagtatctcggtttcaagaaccgt 191  Q
    ||||||||||||||| ||||||||||||| |||| | ||||||||||||| |||||   |||||||| ||||||  || | ||||| |||||||||| ||    
T  8554461 ttgcaaatcaatggaagcattaaaaggaacaatcaaagcaaccaaaatgcaagcctcgaagcttcaaaaactgc--taatttctcgatttcaagaacagt 8554364  T
Q  192 tttatctccaatatcatgttcattat-ccatcaccataaaaacatatcttcgatttctctcataatattgtttt 264  Q
    |||||| ||||||||| ||||| ||| |||||| |  | ||| |||| ||| ||||||||||||||| ||||||    
T  8554363 tttatccccaatatcaggttcagtatcccatcatctcataaatatatgttcaatttctctcataataatgtttt 8554290  T

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Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 310 - 501
Target Start/End: Complemental strand, 33443531 - 33443344
Alignment:
Q  310 ttaataataggctacttatgaaaactttgaagattggtgtgaggaatataatagattatactcttcggagaaagaaagagaagcgctataggtacaaagt 409  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||| |||  ||||||||| ||||||||    ||||| ||| |||| ||||||    
T  33443531 ttaataacaggctacttatgaaaactttgaagattggtgtaaggaatataacagaacatactcttcagagaaaga----gaagcactacaggttcaaagt 33443436  T
Q  410 gtttaagaaaaggtatgcaatgatcacacaccataatcaaatcggaaattctggttccaaactcggcttcaatgattttgccgatctatcct 501  Q
    |||||||||||||||||||| | |||| |  || |||||||||||||||||||||||  ||||| || |||||||||| || ||||||||||    
T  33443435 gtttaagaaaaggtatgcaacggtcacccgacacaatcaaatcggaaattctggttctgaactcagcctcaatgatttcgctgatctatcct 33443344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 33443863 - 33443782
Alignment:
Q  129 gcaaccaaaatgcgagcctaagagcttcaagaactgctatagtatctcggtttcaagaaccgttttatctccaatatcatgttc 212  Q
    ||||| ||| |||||||||  || ||||||||||||||   || || ||||||||||||| |||||||| ||||||||| ||||    
T  33443863 gcaactaaattgcgagcctctgatcttcaagaactgctt--gtctcccggtttcaagaacggttttatccccaatatcaggttc 33443782  T

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