View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_40 (Length: 269)
Name: NF10148_low_40
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 5179737 - 5179985
Alignment:
| Q |
1 |
ggaaatagggtttgttagatttgaggtgtgaaacattggaattggaacggagtgaaagaatggagagtgtgttctgcaacgaacagttcattctcactgc |
100 |
Q |
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| T |
5179737 |
ggaaatagggtttgttggatttgaggtgtgaaacattggaattggaacggagtgaaagaatggagagtgtgttctgtaacgaacagttcattcttactgc |
5179836 |
T |
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| Q |
101 |
cannnnnnnatgctgcctcctcaagctgtttctttcccgcatataacattagtaagcaccctggggtttttctgcccttagatgcatcatacggatttat |
200 |
Q |
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| T |
5179837 |
catttttttatgctgcctcctcaagctgtttctttcccgcatataacattagtaagcactctggggtttttctgcccttagatgcatcatacggatttat |
5179936 |
T |
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| Q |
201 |
caaatgaaatattaattgttgatcataatacaagtaaaacatccctcattttt |
253 |
Q |
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| T |
5179937 |
caaatgaaat----attgttgatcataatacaagtaaaacatccctcattttt |
5179985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 197
Target Start/End: Original strand, 52009541 - 52009737
Alignment:
| Q |
3 |
aaatagggtttgttagatttgaggtgtgaaacattggaattggaacggagtgaaagaatggagagtgtgttctgcaacgaacagttcattctcactgcca |
102 |
Q |
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| T |
52009541 |
aaatagggtttgctggatttgaagtgtgaaacactggaattggaacggagtgaaagaatggagagtgtgttctgtaaggaacagttcattctcactgcca |
52009640 |
T |
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| Q |
103 |
nnnnnnnatgctgcctcctcaagctgtttctttcccgcatataacattagtaagcaccc--tggggtttttctgcccttagatgcatcatacggatt |
197 |
Q |
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| T |
52009641 |
tttttttatgctgcctcctcaaaccgtttgtttcccgcagataacattagtaagcactcagggggggttttctgcccttagatgcatccaacggatt |
52009737 |
T |
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