View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10148_low_41 (Length: 264)

Name: NF10148_low_41
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10148_low_41
NF10148_low_41
[»] chr1 (2 HSPs)
chr1 (1-259)||(14288232-14288490)
chr1 (117-213)||(28927836-28927932)
[»] chr7 (1 HSPs)
chr7 (117-214)||(32414257-32414354)
[»] chr3 (3 HSPs)
chr3 (121-214)||(4150209-4150302)
chr3 (121-214)||(4165978-4166071)
chr3 (117-214)||(13485325-13485422)
[»] scaffold0210 (1 HSPs)
scaffold0210 (125-203)||(15739-15817)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 14288490 - 14288232
Alignment:
Q  1 tgatcattgaaaaatgtcaagttgtggataaacaaaacctctgcatatctagtaccacacttgttaatttaaagattatttcatggtataatcctcctga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14288490 tgatcattgaaaaatgtcaagttgtggataaacaaaacctctgcatatctagtaccacacttgttaatttaaagattatttcatggtataatcctcctga 14288391  T
Q  101 ggcctctttcaaatttgagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14288390 ggcctctttcaaatttgagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaatcaatctctct 14288291  T
Q  201 tctatcaaacatgttgattttggtgtggggttgaattccgcggattctcctttgcttct 259  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  14288290 tctatcaaacatgtggattttggtgtggggttgaattccgcggattctcctttggttct 14288232  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 28927932 - 28927836
Alignment:
Q  117 gagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttctatcaaacatg 213  Q
    ||||||||||| |||| ||| |||| |||| | ||| | | ||| |||||||  |||||| |||||||||| |||||||||||||||||||| ||||    
T  28927932 gagctatccacaccaaatctttgtacctttgaatttggagttacacctcttccgaaactctgtgggagtaagagcaatctctcttctatcaagcatg 28927836  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 32414257 - 32414354
Alignment:
Q  117 gagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttctatcaaacatgt 214  Q
    ||||||||  |||||||||| |||| |||| |||||||||||| |||| |||| ||||||   ||||| || ||||||||||||||||||||||||||    
T  32414257 gagctatcagctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacatgt 32414354  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 4150209 - 4150302
Alignment:
Q  121 tatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttctatcaaacatgt 214  Q
    |||| |||||||||||| ||| |||| |||||| ||||| |||| |||| |||||| ||||||  || | ||||||||||||||||||||||||    
T  4150209 tatctactccaagtctccgtagctttgattttaagggtaatcctattcagaaactcagtgggaacaataacaatctctcttctatcaaacatgt 4150302  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 4165978 - 4166071
Alignment:
Q  121 tatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttctatcaaacatgt 214  Q
    |||| |||||||||||| ||| |||| |||||| ||||| |||| |||| |||||| ||||||  || | ||||||||||||||||||||||||    
T  4165978 tatctactccaagtctccgtagctttgattttaagggtaatcctattcagaaactcagtgggaacaataacaatctctcttctatcaaacatgt 4166071  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 13485422 - 13485325
Alignment:
Q  117 gagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttctatcaaacatgt 214  Q
    |||||||| |||||||||||||| | |||| |||||   |||| |||| |||| ||||||| |||||  || ||||||||||||||||||||||||||    
T  13485422 gagctatctactccaagtctctgcacctttgattttcatggtattcctattcagaaactccatgggatcaagagcaatctctcttctatcaaacatgt 13485325  T

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Target: scaffold0210 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 15817 - 15739
Alignment:
Q  125 cactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaagcaatctctcttct 203  Q
    |||||||||||| | || |||| |||||| ||||| |||||||||||||||  |||| || ||| ||||||||||||||    
T  15817 cactccaagtctttatagctttgattttacgggtattcctcttcaaaaactatgtggaagcaaatgcaatctctcttct 15739  T

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