View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_45 (Length: 251)
Name: NF10148_low_45
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 12661685 - 12661449
Alignment:
| Q |
1 |
caagtttattgggagtgataaagcattaaaggaaaagcaaggtcggcttatttacaacattcatgatctgaaaagtaaataatctatcctatggatagtg |
100 |
Q |
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| T |
12661685 |
caagtttattgggagtgataaagcattaaaggaaaagcaagatcggcttatttacaacattcatgatctgaaaagtaaataatctatcctatggatagtg |
12661586 |
T |
|
| Q |
101 |
gatactacacactagagatcattatgaaattattaggaatataataaaataacattgaagtcttcatcaaattaactaggttgaatgaaagagctttact |
200 |
Q |
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| T |
12661585 |
gatactacacaccagagatcattatgaaattattaggaat---ataaaataacattgaagtcctcatcaaattaactaggttgaatgaaagagctttact |
12661489 |
T |
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| Q |
201 |
catttatgaccaaactcaaaaagaggtataagtgtcctttg |
241 |
Q |
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| T |
12661488 |
catttatgaccaaactc-aaaagaggtataaatgtcctttg |
12661449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 33627258 - 33627448
Alignment:
| Q |
1 |
caagtttattgggagtgataaagcattaaaggaaaagcaaggtcggcttatttacaacattcatgatctgaaaagtaaataatctatcctatggatagtg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33627258 |
caagtttattgggagtgataaagtattaaaggaaaagcaaggtcggcttatttacagcattcatgatctgaaaagtaaataatctatcctatggatagtg |
33627357 |
T |
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| Q |
101 |
gatactacacactagagatcatt-atgaaattattaggaatataataaaataacattgaagtcttcatcaaattaactaggttgaatgaaagag |
193 |
Q |
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||||||||||||||||||||||| | |||||||||||||| ||| || |||||||||||| ||||||||| ||||| || ||||||||||| |
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| T |
33627358 |
gatactacacactagagatcattaaaaaaattattaggaat---atacaacaacattgaagtcctcatcaaatcaactaagtcgaatgaaagag |
33627448 |
T |
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