View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10148_low_50 (Length: 245)

Name: NF10148_low_50
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10148_low_50
NF10148_low_50
[»] chr8 (2 HSPs)
chr8 (1-245)||(5292338-5292582)
chr8 (14-245)||(15123756-15123996)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5292338 - 5292582
Alignment:
Q  1 cacaagaaaatgtccaccatatagagattaatatcctaatccatttgactctttgaacgatcaaggaaacagacaaagaaatccaaatcaatcccttgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5292338 cacaagaaaatgtccaccatatagagattaatatcctaatccatttgactctttgaacgatcaaggaaacagacaaagaaatccaaatcaatcccttgat 5292437  T
Q  101 aatgcaactcagtttctcagagctatcagttttagctatgaaatcccacaatccaatactgaaaaatgcaatgctaatagcaccacaacaaattgagaca 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5292438 aatgcaactcagtttctcagagttatcagttttagctatgaaatcccacaatccaatactgaaaaatgcaatgctaatagtaccacaacaaattgagaca 5292537  T
Q  201 ataatgaaaatccagcattttccgtggcttccatttgtagaactt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5292538 ataatgaaaatccagcattttccgtggcttccatttgtagaactt 5292582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 15123996 - 15123756
Alignment:
Q  14 ccaccatatagagattaatatcctaatccatttgactctttgaacgatcaaggaaacagacaaagaaatccaaatcaatcccttgataatgcaac----- 108  Q
    ||||||||||||| ||||||| |||| | |||||| ||||||||| ||||| |||||||  |||||||||||||| ||||| ||||||||||||          
T  15123996 ccaccatatagagtttaatattctaaccaatttgattctttgaacaatcaatgaaacagcaaaagaaatccaaatgaatcctttgataatgcaaactacc 15123897  T
Q  109 ----tcagtttctcagagctatcagttttagctatgaaatcccacaatccaatactgaaaaatgcaatgctaatagcaccacaacaaattgagacaataa 204  Q
        |||||| ||||||| |||||||||||||||| | || ||| || |||| ||||||||||||||||||||||    ||||||| |||||||||||||    
T  15123896 aaattcagttcctcagagttatcagttttagctataagattccataagccaaaactgaaaaatgcaatgctaataagtgcacaacagattgagacaataa 15123797  T
Q  205 tgaaaatccagcattttccgtggcttccatttgtagaactt 245  Q
     |||| ||||||||||||  |||||| |||||||| |||||    
T  15123796 ggaaattccagcattttctttggctttcatttgtacaactt 15123756  T

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