View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_53 (Length: 242)
Name: NF10148_low_53
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 10529840 - 10529638
Alignment:
| Q |
1 |
tatagaaggaaaatggaagaaacttgatgattcacttattcaaatcacctcataatgaagaactgtacaactacgaaccaacttctgagtaactctaact |
100 |
Q |
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| T |
10529840 |
tatagaaggaaaatggaagaaacttgacgattcacttattcaaatcacctcataatgaagaacggtacaactacgaaccaacttctgactaactctaact |
10529741 |
T |
|
| Q |
101 |
ttcttctaactaatctattgcttactaaaactaattataattttgctaacaaactcaaagtagttagttaatttcaacgatctcaataacttgcagttga |
200 |
Q |
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| T |
10529740 |
ttcttctaactaatctattacttactaaaactaattataattttgctaacaaactcaaagtagttagttaatttcaacgatctcaataacttgcagttga |
10529641 |
T |
|
| Q |
201 |
agt |
203 |
Q |
| |
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||| |
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| T |
10529640 |
agt |
10529638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 10528934 - 10528894
Alignment:
| Q |
200 |
aagtaacaactacaagtgtagttttgcactgcaatcctatg |
240 |
Q |
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||||||||||||||||| |||||||||| |||||||||||| |
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| T |
10528934 |
aagtaacaactacaagtatagttttgcagtgcaatcctatg |
10528894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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