View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_55 (Length: 240)
Name: NF10148_low_55
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12661702 - 12661920
Alignment:
| Q |
1 |
tttattgggattatttaatcaatcgtactcgtatttgttaaggtgaaaaggaagaattacaaaagatgagaactaaag-agacctcctaaactaaagaat |
99 |
Q |
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| T |
12661702 |
tttattgggattatttaatcaatcgtactcgtatttgttaaggtgaaaaggaagaattacaaaagatgagaactaaaggagacctcctaaactaaagaat |
12661801 |
T |
|
| Q |
100 |
gaaatttagatgacagatgaaaatacagaagattaatgtaacaaagctttcaaatccctcgatatacatgaaagaatatnnnnnnnnnnnnntaaccctg |
199 |
Q |
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| T |
12661802 |
gaaatttagatgacagatgaaaatacagaagattaatgtaacaaagctttcaaatccctcgatatacatgaaagaatat------aaaaaaataaccctg |
12661895 |
T |
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| Q |
200 |
caaaaaagctttacatcgatctaat |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
12661896 |
caaaaaagctttacatcgatctaat |
12661920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 33627241 - 33627057
Alignment:
| Q |
1 |
tttattgggattatttaatcaatcgtac----tcgtatttgttaaggtgaaaaggaagaattacaaaagatgagaac---taaag-agacctcctaaact |
92 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||| | |
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| T |
33627241 |
tttattgggattatttaatcaatcgtacgtactcgtatttattaagctgaaaaggaagaattacaaaagatgagaagaagtaaaggagatctcctaaagt |
33627142 |
T |
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| Q |
93 |
aaagaatgaaatttagatgacagatgaaaatacagaagattaatgtaacaaagctttcaaatccctcgatatacatgaaagaatat |
178 |
Q |
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| T |
33627141 |
aaagaatgaaatttagat-acagatgaaaatacagaagattattgtaacaaagttttccaatccctcgatatatatgaaagaatat |
33627057 |
T |
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