View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_59 (Length: 237)
Name: NF10148_low_59
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 10529943 - 10530158
Alignment:
| Q |
1 |
caacttgtaatgagcaactaaggtgtcagatgactcccaattttatgccttgatttgaattgaactcttgctctgagcaaccctattaatgcatttcctt |
100 |
Q |
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| T |
10529943 |
caacttgtaatgagcaactgatgtgtcagatgactcccaaatttatgccttgatttgaattgaactcttgctctgagcaaccctattaatgcatttcctt |
10530042 |
T |
|
| Q |
101 |
tgctcgagaaataatgacagcagcaagggtgtcagatgactcccaaagctttgtgttacgactcttccaaaggcaccaaagtaacattacgacaattttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10530043 |
tgctcgagaaataatgacagcagcaagggtgtcagatgactcccaaagctttgtgttacgactcttccaaaggcaccaaactaacattacgacaatttga |
10530142 |
T |
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| Q |
201 |
tggtggtgagtggata |
216 |
Q |
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||||||| |||||||| |
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| T |
10530143 |
tggtggttagtggata |
10530158 |
T |
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Back To:
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 51492302 - 51492359
Alignment:
| Q |
138 |
gactcccaaagctttgtgttacgactcttccaaaggcaccaaagtaacattacgacaa |
195 |
Q |
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|||||||||||||||| ||| |||||||||||||| | ||| |||| ||||||||||| |
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| T |
51492302 |
gactcccaaagctttgcgtttcgactcttccaaagactccagagtagcattacgacaa |
51492359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 48882318 - 48882284
Alignment:
| Q |
138 |
gactcccaaagctttgtgttacgactcttccaaag |
172 |
Q |
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| T |
48882318 |
gactctcaaagctttgtgttacgactcttccaaag |
48882284 |
T |
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