View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10148_low_61 (Length: 224)

Name: NF10148_low_61
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10148_low_61
NF10148_low_61
[»] chr5 (4 HSPs)
chr5 (149-224)||(22004480-22004555)
chr5 (171-224)||(19085423-19085476)
chr5 (171-224)||(22009574-22009627)
chr5 (171-224)||(26841010-26841063)
[»] chr8 (7 HSPs)
chr8 (149-223)||(5662589-5662663)
chr8 (171-223)||(24788079-24788131)
chr8 (188-224)||(27541621-27541657)
chr8 (171-224)||(5657793-5657846)
chr8 (171-224)||(14678067-14678120)
chr8 (171-224)||(31100918-31100971)
chr8 (188-224)||(23738679-23738715)
[»] chr3 (9 HSPs)
chr3 (149-199)||(53351958-53352008)
chr3 (151-223)||(47763940-47764012)
chr3 (149-224)||(17681789-17681864)
chr3 (171-223)||(24761944-24761996)
chr3 (171-223)||(24815938-24815990)
chr3 (171-223)||(31685100-31685152)
chr3 (188-223)||(2549960-2549995)
chr3 (149-224)||(12538659-12538734)
chr3 (149-224)||(53973309-53973385)
[»] scaffold0096 (1 HSPs)
scaffold0096 (149-224)||(27432-27507)
[»] chr6 (4 HSPs)
chr6 (149-224)||(3065720-3065795)
chr6 (171-224)||(33045477-33045530)
chr6 (171-224)||(30908415-30908468)
chr6 (188-224)||(4660238-4660274)
[»] scaffold0035 (1 HSPs)
scaffold0035 (171-224)||(35085-35138)
[»] chr7 (2 HSPs)
chr7 (171-224)||(1262110-1262163)
chr7 (188-224)||(26910044-26910080)
[»] scaffold0045 (1 HSPs)
scaffold0045 (188-224)||(11697-11733)
[»] chr2 (2 HSPs)
chr2 (149-205)||(24454556-24454612)
chr2 (180-224)||(10328947-10328991)
[»] scaffold0157 (1 HSPs)
scaffold0157 (171-224)||(13966-14019)
[»] chr4 (2 HSPs)
chr4 (171-224)||(12506458-12506511)
chr4 (188-224)||(24260242-24260278)
[»] scaffold0475 (1 HSPs)
scaffold0475 (188-224)||(7536-7572)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 22004480 - 22004555
Alignment:
Q  149 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  22004480 gagatccaacggaccaccttgattggcgcctaaactatctaggtttagggtttgcaaaatcattagcaatgttaac 22004555  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 19085423 - 19085476
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| |||||||||    
T  19085423 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaac 19085476  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 22009574 - 22009627
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| ||| |||| || ||||||||||||||||||| ||||||| |||||||||    
T  22009574 ttggagccaaaaccatttaggtttagggtttgcaaattcattagcaatgttaac 22009627  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 26841010 - 26841063
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| ||| |||| || ||||||||||||||||||| ||||||| |||||||||    
T  26841010 ttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaac 26841063  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 5662663 - 5662589
Alignment:
Q  149 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 223  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||    
T  5662663 gagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaatattaa 5662589  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 24788079 - 24788131
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 223  Q
    |||||||| |||| |  ||||||||||||||||||||||||||| ||||||||    
T  24788079 ttggcgccaaaactaattaggtttagggtttgcaaagtcattagcaatgttaa 24788131  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 27541621 - 27541657
Alignment:
Q  188 taggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    ||||||||||||||||||||||||||| |||||||||    
T  27541621 taggtttagggtttgcaaagtcattagcaatgttaac 27541657  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 5657846 - 5657793
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| || ||||||    
T  5657846 ttggagccaaaactatttaggtttagggtttgcaaagtcattagcaacgttaac 5657793  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 14678067 - 14678120
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| ||| |||| || |||||||||||||| |||||||||||| |||||||||    
T  14678067 ttggagccaaaaccatttaggtttagggttttcaaagtcattagcaatgttaac 14678120  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 31100918 - 31100971
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| ||| |||| || |||||||||| |||||||||||||||| |||||||||    
T  31100918 ttggagccaaaaccatttaggtttaggatttgcaaagtcattagcaatgttaac 31100971  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 23738715 - 23738679
Alignment:
Q  188 taggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| |||||||||||||||||||||| |||||||||    
T  23738715 tagggttagggtttgcaaagtcattagcaatgttaac 23738679  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 53351958 - 53352008
Alignment:
Q  149 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggt 199  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53351958 gagatccaacggaccaccttgattggcgcctaaactatctaggtttagggt 53352008  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 47763940 - 47764012
Alignment:
Q  151 gatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 223  Q
    ||||||||||||| |||||||||||||||||| | ||||| |||||| |||||||||| ||||| ||||||||    
T  47763940 gatccaacggacctccttgattggcgcctaaaaattctagatttaggttttgcaaagttattagcaatgttaa 47764012  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 17681864 - 17681789
Alignment:
Q  149 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||||||||||| || ||||| |||| ||| |||| || ||||||||||||||||||| ||||||  |||||||||    
T  17681864 gagatccaacggccccccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattaacaatgttaac 17681789  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 24761944 - 24761996
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 223  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| ||||||||    
T  24761944 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaa 24761996  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 24815990 - 24815938
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 223  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| ||||||||    
T  24815990 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaa 24815938  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 31685152 - 31685100
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaa 223  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| ||||||||    
T  31685152 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaa 31685100  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 2549995 - 2549960
Alignment:
Q  188 taggtttagggtttgcaaagtcattagtaatgttaa 223  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2549995 taggtttagggtttgcaaagtcattagcaatgttaa 2549960  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 12538659 - 12538734
Alignment:
Q  149 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||||||||||| |  ||||| |||| ||| |||| || ||||||||||||||||||| ||||||| || ||||||    
T  12538659 gagatccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattagaaaggttaac 12538734  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 53973309 - 53973385
Alignment:
Q  149 gagatccaacggaccaccttgatt-ggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||||||||||| |  |||||||| || ||| |||| || ||||||||||||||||||  ||||||| |||||||||    
T  53973309 gagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaac 53973385  T

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Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 27507 - 27432
Alignment:
Q  149 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||||||||||| |  ||||| |||| ||| |||| || ||||||||||||||||||| ||||||| |||||||||    
T  27507 gagatccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaac 27432  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 3065795 - 3065720
Alignment:
Q  149 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||||||||||| |  ||||| |||| ||| |||| || |||||||||||||||||||||||||||  ||||||||    
T  3065795 gagatccaacggtctcccttgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaac 3065720  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 33045477 - 33045530
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| |||||||||    
T  33045477 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaac 33045530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 30908415 - 30908468
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| ||| |||| || ||| ||||||||||||||||||||||| |||||||||    
T  30908415 ttggagccaaaaccatttagatttagggtttgcaaagtcattagcaatgttaac 30908468  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 4660238 - 4660274
Alignment:
Q  188 taggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| |||||||||||||||||||||| |||||||||    
T  4660238 tagggttagggtttgcaaagtcattagcaatgttaac 4660274  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 35138 - 35085
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| |||||||||    
T  35138 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaac 35085  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 1262163 - 1262110
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| ||| |||| || ||||||||||||||||||||||||||| |||||||||    
T  1262163 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaac 1262110  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 26910044 - 26910080
Alignment:
Q  188 taggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  26910044 taggtttagggtttgcaaagttattagcaatgttaac 26910080  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 11697 - 11733
Alignment:
Q  188 taggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    ||||||||||||||||||||||||||| |||||||||    
T  11697 taggtttagggtttgcaaagtcattagcaatgttaac 11733  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 24454612 - 24454556
Alignment:
Q  149 gagatccaacggaccaccttgattggcgcctaaacaatctaggtttagggtttgcaa 205  Q
    |||||||||||| || ||||| |||||||||||| ||| |||||||||| |||||||    
T  24454612 gagatccaacggccctccttgtttggcgcctaaaaaatttaggtttaggatttgcaa 24454556  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 10328947 - 10328991
Alignment:
Q  180 aaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    ||||||| ||||||||||||||||||  ||||||| |||||||||    
T  10328947 aaacaatttaggtttagggtttgcaatttcattagcaatgttaac 10328991  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 13966 - 14019
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||||||| |||  || |||||||||| |||||||||||||||| |||||||||    
T  13966 ttggcgcccaaattatttaggtttaggatttgcaaagtcattagcaatgttaac 14019  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 12506511 - 12506458
Alignment:
Q  171 ttggcgcctaaacaatctaggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||||||| |||  || |||||||||| |||||||||||||||| |||||||||    
T  12506511 ttggcgcccaaattatttaggtttaggatttgcaaagtcattagcaatgttaac 12506458  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 24260278 - 24260242
Alignment:
Q  188 taggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| |||||||||||||||||||||| |||||||||    
T  24260278 tagggttagggtttgcaaagtcattagcaatgttaac 24260242  T

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Target: scaffold0475 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 7536 - 7572
Alignment:
Q  188 taggtttagggtttgcaaagtcattagtaatgttaac 224  Q
    |||| |||||||||||||||||||||| |||||||||    
T  7536 tagggttagggtttgcaaagtcattagcaatgttaac 7572  T

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