View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_7 (Length: 450)
Name: NF10148_low_7
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_7 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 45656488 - 45656822
Alignment:
| Q |
15 |
ctattatcattgagaaagcttctaggttacgtgagtttcacacatgcatcaaggaatcgtgcatcatgtgcaagaggacaagagatgatgatgggcttgt |
114 |
Q |
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| T |
45656488 |
ctattatcattgagaaagcttctaggttacgtgagtttcacacatgcatcaaggaatcgtgcatcatgtgtaagaggacaagagatgatgatgggcttgt |
45656587 |
T |
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| Q |
115 |
taggtggttcaagtatgaggaagggatttggaaacatgatgaagttagctctcttgcactttgagaaaacaaaatatcgtattatatatgcatgcaataa |
214 |
Q |
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| T |
45656588 |
taggtggttcaagtatgaggaagggatttggaaacatgatgaagttagctctcttgcactttgagaaaacaaaatatcgtattttatatgcatgcaataa |
45656687 |
T |
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| Q |
215 |
gctattacatcttatgtaatatttgcactttg--nnnnnnnngagatattgttttggccttataggcaaggaacaattttatcttatgtactgtatgtta |
312 |
Q |
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| T |
45656688 |
gctattacatcttatgtaatatttgcactttgttaatcatttgagatattgttttggccttataggcaaggaacaattttattttatgtactgtatgtta |
45656787 |
T |
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| Q |
313 |
tttacctgagatattatgaacaaatatctttgttg |
347 |
Q |
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| T |
45656788 |
tttacctgagatgttatgaacaaatatctttgttg |
45656822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 45656853 - 45656919
Alignment:
| Q |
378 |
agaattacttcatagatcttataatttaatttaaagtttggggttcaccatttattcttcttctctc |
444 |
Q |
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| T |
45656853 |
agaattacttcatagatcttataatttaatttaaagtttcgggttcactatttattcttcttctctc |
45656919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 38548 - 38394
Alignment:
| Q |
27 |
agaaagcttctaggttacgtgagtttcacacatgcatcaaggaatcgtgcatcatgtgcaagaggacaagagatgatgatgggcttgttaggtggttcaa |
126 |
Q |
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| T |
38548 |
agaaggcttctaagttgcgtgaatttcacacatgcatgaaagaatcatgcatcatgtgtcatcgaacaagagttgattgtgggcttcctaggtggtttag |
38449 |
T |
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| Q |
127 |
gtatgaggaagggatttggaaacatgatgaagttagctctcttgcactttgagaa |
181 |
Q |
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| T |
38448 |
gtatgaggaagggatttggaaacatgatgaagttagctctcttgcactctgagaa |
38394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 40947997 - 40947875
Alignment:
| Q |
54 |
acacatgcatcaaggaatcgtgcatcatgtgcaagaggacaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatga |
153 |
Q |
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| T |
40947997 |
acacatgcatggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatggacttcctagatggttcagatacgaggatgggatttggaaagatga |
40947898 |
T |
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| Q |
154 |
tgaagttagctctcttgcacttt |
176 |
Q |
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| T |
40947897 |
tgaaataagttctcttgcacttt |
40947875 |
T |
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