View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10148_low_8 (Length: 445)
Name: NF10148_low_8
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10148_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 26 - 335
Target Start/End: Complemental strand, 14461008 - 14460697
Alignment:
| Q |
26 |
ccaaactatgatttctattcacttaaactttgaaaaatgaagcatgtgttatctaccaatcttaacatgcgttcaatctttgccttatgaaatagtt-at |
124 |
Q |
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| T |
14461008 |
ccaaactatgatttctattcacttaaactttgaaaaatgaagcatgtgttatctaccaatcttaacatgcgttcaatctttgccctatgaaatagttcat |
14460909 |
T |
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| Q |
125 |
tttttgttgtgatgcttcatgcttttgcagagttaaataattcctcaaca-acaaattacaagaactgacgaagaagccgatggtgagatgtttgttttg |
223 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14460908 |
tttttgttgtgatgcttcatgctttctcagagttaaataattcctcaacatacaaattacaagaactgacgaagaagccaatggtgagatgtttgttttg |
14460809 |
T |
|
| Q |
224 |
acagggatgattcatttattgtaatgtaaggagagagaaaataaataaaacaaaattacattactgcccattaaattaagtggtttttaaaagggttatt |
323 |
Q |
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| T |
14460808 |
acagggatgattcatttattgtaatgtaaggagagagaaaataaataaaacaaaattacattactgcccattaaattaagtggtttataaaagggttatt |
14460709 |
T |
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| Q |
324 |
tggatttgtaga |
335 |
Q |
| |
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||| ||| |||| |
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| T |
14460708 |
tgggtttttaga |
14460697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 5659207 - 5659514
Alignment:
| Q |
21 |
agtaaccaaactatgatttctattcacttaaactttgaaaaatgaagcatgtgttatctaccaatcttaacatgcgttcaatctttgccttatgaaatag |
120 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |||||||| |
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| T |
5659207 |
agtaacaaaactatgatttctattcacttaaactttgaaaaatgaagcatgtgttatcttccagtcttgacatgcgttcaatctttgccttgtgaaatag |
5659306 |
T |
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| Q |
121 |
tt-attttttgttgtgatgcttcatgcttttgcagagttaaataattcctcaaca-acaaattacaagaactgacgaagaagccgatggtgagatgtttg |
218 |
Q |
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| T |
5659307 |
ttccttttttgttgtgctacttcatgcttttgcacagttaaataattcatcaacatacaaattacaagaactgacgaagaagccgatggtgagatgtttg |
5659406 |
T |
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| Q |
219 |
ttttgacagggatgattcatttattgtaatgtaaggagagagaaaataaataaaacaaaattacattactgcccattaaattaagtggttttt-aaaagg |
317 |
Q |
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| T |
5659407 |
ttttgacagggatgattcatttattgtaat-taaggagagagaaaataaataaaacaaaattacattactgccaattaaattaagtggtttttcaaaagg |
5659505 |
T |
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| Q |
318 |
gttatttgg |
326 |
Q |
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||||||||| |
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| T |
5659506 |
gttatttgg |
5659514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 5658490 - 5658440
Alignment:
| Q |
277 |
aattacattactgcccattaaattaagtggt-ttttaaaagggttatttgg |
326 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5658490 |
aattacattactgcccattaaattaagtggttttttaaaagggttatttgg |
5658440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 42992780 - 42992838
Alignment:
| Q |
268 |
ataaaacaaaattacattactgcccattaaattaagtggtttttaaaagggttatttgg |
326 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42992780 |
ataaaacaaaattacattactgtccattaaattaagtggtttttaaaagggttatttgg |
42992838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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