View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10148_low_9 (Length: 444)

Name: NF10148_low_9
Description: NF10148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10148_low_9
NF10148_low_9
[»] chr4 (14 HSPs)
chr4 (193-429)||(30956485-30956716)
chr4 (15-145)||(30956350-30956483)
chr4 (359-421)||(43699543-43699606)
chr4 (351-395)||(28663397-28663441)
chr4 (359-421)||(18424337-18424400)
chr4 (363-421)||(29996699-29996758)
chr4 (355-421)||(34633358-34633425)
chr4 (355-416)||(35405643-35405706)
chr4 (356-421)||(38345881-38345947)
chr4 (357-421)||(23297399-23297464)
chr4 (357-421)||(29877600-29877665)
chr4 (355-396)||(35124346-35124387)
chr4 (355-416)||(52700609-52700670)
chr4 (357-421)||(7148889-7148953)
[»] chr7 (4 HSPs)
chr7 (355-421)||(29378762-29378829)
chr7 (365-421)||(6406779-6406836)
chr7 (361-420)||(29390611-29390671)
chr7 (363-418)||(38372525-38372581)
[»] chr1 (4 HSPs)
chr1 (357-429)||(391129-391202)
chr1 (355-421)||(37329314-37329381)
chr1 (354-424)||(26946162-26946233)
chr1 (354-421)||(28690121-28690189)
[»] chr5 (7 HSPs)
chr5 (361-421)||(13739346-13739407)
chr5 (363-429)||(13739243-13739310)
chr5 (356-421)||(35536961-35537027)
chr5 (355-396)||(11163355-11163396)
chr5 (361-424)||(10537134-10537198)
chr5 (370-421)||(17128252-17128304)
chr5 (354-421)||(40697123-40697191)
[»] chr3 (4 HSPs)
chr3 (357-429)||(22809246-22809319)
chr3 (357-421)||(29270322-29270387)
chr3 (356-419)||(35480305-35480368)
chr3 (370-421)||(40581137-40581189)
[»] chr2 (4 HSPs)
chr2 (354-393)||(9140645-9140684)
chr2 (355-421)||(29774704-29774771)
chr2 (359-396)||(38215986-38216023)
chr2 (355-395)||(18276904-18276944)
[»] chr8 (3 HSPs)
chr8 (364-421)||(32131408-32131466)
chr8 (358-421)||(24087288-24087352)
chr8 (358-421)||(28879172-28879236)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 193 - 429
Target Start/End: Original strand, 30956485 - 30956716
Alignment:
Q  193 caagaagagtatatatagaaagaatacaatttatcaaaatactgtaacactcagcatgccaaaacataatagcttaaaaaagttcaaaattgttatatta 292  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||    
T  30956485 caagaagagtatatatagaaagaatacaatttatcaaag--ctgtaacactaagcatgccaaa---taatagcttaaaaaagttcaaaattgttatatta 30956579  T
Q  293 ttaaggtttcttgtaatctaatcaactcctaaaacttaactcatgtcttgatacaaaacatcaagggcccgtttgggttgacttatttttgagtttatgc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30956580 ttaaggtttcttgtaatctaatcaactcctaaaacttaactcatgtcttgatacaaaacatcaagggcccgtttgggttgacttattttttagtttatgc 30956679  T
Q  393 aaaaaacttgtacaaataaataagctttttatttatt 429  Q
    |||||||||||||||||||||||||||||||| ||||    
T  30956680 aaaaaacttgtacaaataaataagctttttatgtatt 30956716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 30956350 - 30956483
Alignment:
Q  15 aggataaatcaat--tgttactagtgagatcaaagtgtaaagcacatacaagtggagccacttcaatcttagcaaacaactttttcttcagaataaagca 112  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30956350 aggataaatcaatcttgttactagtgagatcaaagtgtaaagcacatacaagtggagccacttcaatcttagcaaacaactttttcttcagaataatgca 30956449  T
Q  113 tataataaaatag-ggaaccaacatgcaggtttc 145  Q
    ||||||||||||| | || |||||||||||||||    
T  30956450 tataataaaatagagaaatcaacatgcaggtttc 30956483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 43699606 - 43699543
Alignment:
Q  359 gcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    |||||||||| ||| |||||||||||| ||||| |||| ||||| |||||||||||||||||||    
T  43699606 gcccgtttggattggcttatttttgagcttatgaaaaacaacttatacaaataaataagctttt 43699543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 395
Target Start/End: Original strand, 28663397 - 28663441
Alignment:
Q  351 catcaagggcccgtttgggttgacttatttttgagtttatgcaaa 395  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||    
T  28663397 catcaagggtccgtttggattgacttatttttgagcttatgcaaa 28663441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 18424400 - 18424337
Alignment:
Q  359 gcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    |||||||||  ||||| |||||||||| |||||||||| || || |||||||||||||||||||    
T  18424400 gcccgtttgaattgacatatttttgagcttatgcaaaacaatttatacaaataaataagctttt 18424337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 29996758 - 29996699
Alignment:
Q  363 gtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    |||||| ||||||||||||||||||| ||||||| || || | |||||||||||||||||    
T  29996758 gtttggtttgacttatttttgagtttttgcaaaacaatttatgcaaataaataagctttt 29996699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 421
Target Start/End: Original strand, 34633358 - 34633425
Alignment:
Q  355 aagggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    |||||||||||||| ||| ||||||||| || |||||||||| ||||| | ||||||||||| |||||    
T  34633358 aagggcccgtttggattggcttattttttagcttatgcaaaacaacttatgcaaataaataaactttt 34633425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 35405643 - 35405706
Alignment:
Q  355 aagggcccgtttggg-ttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataag 416  Q
    |||||||||||| || |||||||||||||||| |||||||||| ||||| ||||||||| ||||    
T  35405643 aagggcccgttttggattgacttatttttgagcttatgcaaaacaacttatacaaataactaag 35405706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 38345947 - 38345881
Alignment:
Q  356 agggcccgtttgggttgacttatttttgagtttatgcaaaaaa-cttgtacaaataaataagctttt 421  Q
    |||| |||||||| ||||||||| |||||| |||||||||| | ||| | |||||||||||||||||    
T  38345947 agggtccgtttggattgacttatgtttgagcttatgcaaaacagcttatccaaataaataagctttt 38345881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 23297399 - 23297464
Alignment:
Q  357 gggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    ||||| |||||| ||| |||||||||||| |||||||||| | ||| | |||||||||||||||||    
T  23297399 gggcctgtttggattggcttatttttgagcttatgcaaaatagcttatgcaaataaataagctttt 23297464  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 29877600 - 29877665
Alignment:
Q  357 gggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    ||||| |||||| ||| |||||||||||| |||||||||| || || | |||||||||||||||||    
T  29877600 gggcctgtttggattggcttatttttgagcttatgcaaaacaatttatgcaaataaataagctttt 29877665  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 35124346 - 35124387
Alignment:
Q  355 aagggcccgtttgggttgacttatttttgagtttatgcaaaa 396  Q
    |||||||| ||||| |||||||||||||||| ||||||||||    
T  35124346 aagggcccatttggattgacttatttttgagcttatgcaaaa 35124387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 52700670 - 52700609
Alignment:
Q  355 aagggcccgtttgggttgacttatttttgagtttatgcaaaaaacttgtacaaataaataag 416  Q
    ||||| |||||||| |||||||||||| ||| ||||||||| ||||| |  |||||||||||    
T  52700670 aagggtccgtttggattgacttattttagagcttatgcaaacaacttatgtaaataaataag 52700609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 7148953 - 7148889
Alignment:
Q  357 gggcccgtttgggttgacttatttttgagtttatgcaaaaaacttgtacaaataaataagctttt 421  Q
    |||| ||||||| ||||||||||| |||| ||||| ||| | ||| | |||||||||||||||||    
T  7148953 gggctcgtttggattgacttatttctgagcttatgaaaatagcttatgcaaataaataagctttt 7148889  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 29378829 - 29378762
Alignment:
Q  355 aagggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    |||||||||||||| |||||||||||||||||||||| |||| | ||| | |||||||||||||||||    
T  29378829 aagggcccgtttggattgacttatttttgagtttatgaaaaatagcttatgcaaataaataagctttt 29378762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 6406779 - 6406836
Alignment:
Q  365 ttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    |||| |||||||||||||||| ||||| |||| ||||| |||||||||||||| ||||    
T  6406779 ttggattgacttatttttgagcttatgaaaaataacttatacaaataaataagatttt 6406836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 29390671 - 29390611
Alignment:
Q  361 ccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagcttt 420  Q
    |||||||| ||| |||||||||||||||||| |||| ||||| | ||||||||||| ||||    
T  29390671 ccgtttggattggcttatttttgagtttatggaaaacaacttatgcaaataaataatcttt 29390611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 38372525 - 38372581
Alignment:
Q  363 gtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagct 418  Q
    |||||| |||||||||||||||| |||||||||| | ||| | ||||||||||||||    
T  38372525 gtttggattgacttatttttgagcttatgcaaaacagcttatgcaaataaataagct 38372581  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 391129 - 391202
Alignment:
Q  357 gggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttttatttatt 429  Q
    |||||||||||| ||| |||||||||||| |||||||||| | ||| | |||||||||||||||||||| ||||    
T  391129 gggcccgtttggattggcttatttttgaggttatgcaaaacagcttatgcaaataaataagctttttatatatt 391202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 421
Target Start/End: Original strand, 37329314 - 37329381
Alignment:
Q  355 aagggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    |||||||||||||| | |||||||||||||| ||||| |||| ||||| | |||||||||||||||||    
T  37329314 aagggcccgtttggatcgacttatttttgagcttatgaaaaataacttatgcaaataaataagctttt 37329381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 26946233 - 26946162
Alignment:
Q  354 caagggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttttat 424  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||   ||| |  |||||||||||||||||||    
T  26946233 caagggcccatttggattgacttatttttgagcttatgcaaaacggcttatgtaaataaataagctttttat 26946162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 28690189 - 28690121
Alignment:
Q  354 caagggcccgtttgggttgacttatttttgagtttatgcaaaaaa-cttgtacaaataaataagctttt 421  Q
    |||||| |||||||| ||||||| |||||||| ||||| |||| | ||| | |||||||||||||||||    
T  28690189 caaggggccgtttggattgacttgtttttgagcttatgaaaaatagcttatgcaaataaataagctttt 28690121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 13739407 - 13739346
Alignment:
Q  361 ccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    |||||||| ||| |||||||||||||||||| |||| ||||| | |||||||||||||||||    
T  13739407 ccgtttggattggcttatttttgagtttatgaaaaataacttatgcaaataaataagctttt 13739346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 429
Target Start/End: Original strand, 13739243 - 13739310
Alignment:
Q  363 gtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttttatttatt 429  Q
    ||||||||||||||||||||||| |||| ||||| | ||| | || ||||||||||||||||| ||||    
T  13739243 gtttgggttgacttatttttgagcttattcaaaacagcttatgcatataaataagctttttatgtatt 13739310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 35537027 - 35536961
Alignment:
Q  356 agggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    |||| |||||||| |||||||||||||||| ||||| |||| | ||| | |||||||||||||||||    
T  35537027 agggtccgtttggattgacttatttttgagattatgaaaaatagcttatgcaaataaataagctttt 35536961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 11163396 - 11163355
Alignment:
Q  355 aagggcccgtttgggttgacttatttttgagtttatgcaaaa 396  Q
    |||||||||||||| ||||||||||||| || ||||||||||    
T  11163396 aagggcccgtttggattgacttattttttagcttatgcaaaa 11163355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 10537134 - 10537198
Alignment:
Q  361 ccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttttat 424  Q
    |||||||| ||| |||||||||||||||||| |||| | ||| | |||||| |||||||||||||    
T  10537134 ccgtttggattggcttatttttgagtttatgaaaaatagcttatgcaaatatataagctttttat 10537198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 17128252 - 17128304
Alignment:
Q  370 ttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    |||||||||||||||| |||||||||| | ||| | |||||||||||||||||    
T  17128252 ttgacttatttttgagcttatgcaaaacagcttatgcaaataaataagctttt 17128304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 40697191 - 40697123
Alignment:
Q  354 caagggcccgtttgggttgacttatttttgagtttatgcaaaaaa-cttgtacaaataaataagctttt 421  Q
    |||||| | |||||| ||| |||||||||||| ||||| |||| | ||| |||||||||||||||||||    
T  40697191 caagggtctgtttggattggcttatttttgagcttatgaaaaatagcttatacaaataaataagctttt 40697123  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 429
Target Start/End: Complemental strand, 22809319 - 22809246
Alignment:
Q  357 gggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttttatttatt 429  Q
    ||||| |||||  |||||||||||||||| |||||||||| | ||| | |||||||||||||||||||| ||||    
T  22809319 gggcctgtttgaattgacttatttttgaggttatgcaaaacagcttatgcaaataaataagctttttatatatt 22809246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 29270322 - 29270387
Alignment:
Q  357 gggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    ||||| |||||| |||||||||||||||| |||||||||| ||||| ||  |||||||||||||||    
T  29270322 gggcctgtttggattgacttatttttgagcttatgcaaaacaacttataggaataaataagctttt 29270387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 419
Target Start/End: Original strand, 35480305 - 35480368
Alignment:
Q  356 agggcccgtttgggttgacttatttttgagtttatgcaaaaaacttgtacaaataaataagctt 419  Q
    |||||| |||||| |||||||||||||||| ||||| ||| ||||| | ||||||||| |||||    
T  35480305 agggcctgtttggattgacttatttttgagcttatgaaaataacttatgcaaataaatgagctt 35480368  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 40581189 - 40581137
Alignment:
Q  370 ttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    ||||||||| |||||| |||||||||| ||||| | |||||||||||||||||    
T  40581189 ttgacttatctttgagcttatgcaaaacaacttatgcaaataaataagctttt 40581137  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 393
Target Start/End: Original strand, 9140645 - 9140684
Alignment:
Q  354 caagggcccgtttgggttgacttatttttgagtttatgca 393  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  9140645 caagggcccgtttggattgacttatttttgagcttatgca 9140684  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 421
Target Start/End: Original strand, 29774704 - 29774771
Alignment:
Q  355 aagggcccgtttgggttgacttatttttgagtttatgca-aaaaacttgtacaaataaataagctttt 421  Q
    |||||||||||||||||| ||||||||| || ||||||| || ||||| | ||||||||||| |||||    
T  29774704 aagggcccgtttgggttgtcttattttttagcttatgcataacaacttatgcaaataaataaactttt 29774771  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 38215986 - 38216023
Alignment:
Q  359 gcccgtttgggttgacttatttttgagtttatgcaaaa 396  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  38215986 gcccgtttggattgacttatttttgagcttatgcaaaa 38216023  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 18276904 - 18276944
Alignment:
Q  355 aagggcccgtttgggttgacttatttttgagtttatgcaaa 395  Q
    ||||||||| |||| |||||||||||||||| |||||||||    
T  18276904 aagggcccgcttggattgacttatttttgagcttatgcaaa 18276944  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 32131408 - 32131466
Alignment:
Q  364 tttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    ||||| |||||||||||||||| |||||||||| | ||| | |||||||||||||||||    
T  32131408 tttggattgacttatttttgagcttatgcaaaacagcttatgcaaataaataagctttt 32131466  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 421
Target Start/End: Complemental strand, 24087352 - 24087288
Alignment:
Q  358 ggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    ||||||||||| |||||||||||||||||  ||| |||| | ||| | |||||||||||||||||    
T  24087352 ggcccgtttggattgacttatttttgagtgaatgaaaaatagcttatgcaaataaataagctttt 24087288  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 421
Target Start/End: Complemental strand, 28879236 - 28879172
Alignment:
Q  358 ggcccgtttgggttgacttatttttgagtttatgcaaaa-aacttgtacaaataaataagctttt 421  Q
    ||||||||||| ||||||||||||| || ||||| |||| | ||| | |||||||||||||||||    
T  28879236 ggcccgtttggattgacttattttttagcttatgaaaaatagcttatgcaaataaataagctttt 28879172  T

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