View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10149_high_3 (Length: 252)
Name: NF10149_high_3
Description: NF10149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10149_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 44130300 - 44130534
Alignment:
| Q |
1 |
ttcatatgatgattatgatctgaacaatccttgagagagcatattgagaaaaagctcaagaatgttgaggcaagggttatgcagaatagacttatagcaa |
100 |
Q |
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| T |
44130300 |
ttcatatgatgatgatgatctgaacaatccttgagagagcatattgagaaaaagctcaagaatgttgaggtaagggttatgcagaatagacttatagcaa |
44130399 |
T |
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| Q |
101 |
ctcaaattttctaatattccctatttcatcacatcaaatgagtgttcttttaccactcaacgcaaacatattctaaaggataatgctaatgaaattgaaa |
200 |
Q |
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| T |
44130400 |
ctcaaattttctaatattccctatttcatcacatcaaatgagtgttcttttaccactcaacgcaaacatattctaaaggataacgctaatgaaattgaaa |
44130499 |
T |
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| Q |
201 |
atcttggccagtttcttatacttttcattttttct |
235 |
Q |
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| T |
44130500 |
atcttggccagtttcttatacttttcattttttct |
44130534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 44147095 - 44147209
Alignment:
| Q |
72 |
aagggttatgcagaatagacttatagcaactcaaattttctaatattccctat------ttcatca-catcaaatgagtgttcttttaccactcaacgca |
164 |
Q |
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| T |
44147095 |
aagggttatgcagaatagatttatagccactcaaattttctaatattccctattccctattccttatcatcaaatgaatgttcttttatcactcaacgca |
44147194 |
T |
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| Q |
165 |
aacatattctaaagg |
179 |
Q |
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| T |
44147195 |
aacgtattcaaaagg |
44147209 |
T |
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