View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10149_high_6 (Length: 218)
Name: NF10149_high_6
Description: NF10149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10149_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 5909892 - 5909692
Alignment:
| Q |
1 |
gaagttccaacatgtcccgaattaccaatgccagaatctgcaacatacgaaaacatggacataatagttgcaaagttaccatgcaagtatccagaagaag |
100 |
Q |
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| T |
5909892 |
gaagttccaacatgtcctgaattaccaatgccagaatttgcaacatacgaaaacatggacataatagttgcaaagttaccatgcaagtatccagaagaag |
5909793 |
T |
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| Q |
101 |
gatgggctagggaagttttaaggttacaagttcatcttatggtagcaaatatggttgtgaagaaagggaagaaagattggaaacggaagagtagagttat |
200 |
Q |
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| T |
5909792 |
gatgggctagggaagttttaaggttacaagttcatcttatggtagcaaatatggttgtgaagaaagggaagaaagattggaaacggaagagtagagttat |
5909693 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
5909692 |
t |
5909692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 4 - 193
Target Start/End: Complemental strand, 5914386 - 5914197
Alignment:
| Q |
4 |
gttccaacatgtcccgaattaccaatgccagaatctgcaacatacgaaaacatggacataatagttgcaaagttaccatgcaagtatccagaagaaggat |
103 |
Q |
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||||||||||||||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
5914386 |
gttccaacatgtcccgagttaccaatgcccgaattcgcaacatatgaaaacatggacataatagttgcaaagttaccatgcaagtatccattagaagggt |
5914287 |
T |
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| Q |
104 |
gggctagggaagttttaaggttacaagttcatcttatggtagcaaatatggttgtgaagaaagggaagaaagattggaaacggaagagta |
193 |
Q |
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||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || || ||||||||| ||||||||| |
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| T |
5914286 |
gggggagagaagttttaaggttacaagttcatcttatagttgcaaatatggttgtgaagaaaggaaaaaaggattggaaatggaagagta |
5914197 |
T |
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