View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10149_low_11 (Length: 207)

Name: NF10149_low_11
Description: NF10149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10149_low_11
NF10149_low_11
[»] chr2 (16 HSPs)
chr2 (1-207)||(30187103-30187309)
chr2 (5-205)||(30221194-30221394)
chr2 (13-207)||(30168652-30168846)
chr2 (5-206)||(30065666-30065867)
chr2 (7-206)||(30787728-30787927)
chr2 (5-206)||(30009169-30009370)
chr2 (7-206)||(30249378-30249577)
chr2 (1-207)||(30020447-30020653)
chr2 (1-207)||(30040042-30040248)
chr2 (1-207)||(30109520-30109726)
chr2 (1-207)||(30121219-30121425)
chr2 (1-207)||(30234180-30234386)
chr2 (1-207)||(30102990-30103196)
chr2 (1-156)||(30078904-30079059)
chr2 (5-129)||(30277055-30277179)
chr2 (1-156)||(30136236-30136391)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 30187103 - 30187309
Alignment:
Q  1 tcactgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcct 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30187103 tcactgtcaataagtttctttgcctcagcaaccatgttgtccacactgttcagccagtcctggacaaacttttcaatctcttctccattatttctagcct 30187202  T
Q  101 cgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30187203 cgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaggttgtccttgtagtagagtatgtaaccaaa 30187302  T
Q  201 ttgacga 207  Q
    |||||||    
T  30187303 ttgacga 30187309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 30221394 - 30221194
Alignment:
Q  5 tgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcctcgtc 104  Q
    |||||||||||||||||||||||||||| |||||||||||||  |||||||  | | ||||||  ||||||||||||||||| ||  |||||||||| ||    
T  30221394 tgtcaataagtttctttgcctcagcaacagtgttgtccacaccattcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatc 30221295  T
Q  105 aactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaattga 204  Q
    |||  || | ||||||  |||||||| |||||| ||||||||||| ||| ||| ||||||||||| |||  | |||||||| ||||||||||||||||||    
T  30221294 aacactgtgctgcacatgatcttttgatccttcgagcttttggacctcaattttcatcctttgaaggtttcctttgtagtatagtatgtaaccaaattga 30221195  T
Q  205 c 205  Q
    |    
T  30221194 c 30221194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 30168846 - 30168652
Alignment:
Q  13 agtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcctcgtcaactttgc 112  Q
    ||||| ||||||||||||||| || |||||||  |||||| || || ||| ||||  || |||||||||||||| ||  |||||||||| |||||  ||     
T  30168846 agtttatttgcctcagcaaccatgatgtccactttgttcatccagttctgaacaatattctcaatctcttctccgttgcttctagcctcatcaacagtgt 30168747  T
Q  113 gttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaattgacga 207  Q
    ||||||||||| |||||||||| || ||||||||||||| ||||| |||||||| || |||   |||||||||||||||||||||||||||||||    
T  30168746 gttgcacactagcttttgttccctccagcttttggacattagttttcatcctttcaaggtttcgcttgtagtagagtatgtaaccaaattgacga 30168652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 30065867 - 30065666
Alignment:
Q  5 tgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcctcgtc 104  Q
    ||||||| ||||| |||||||| ||||  |||||||||||  || ||| ||  |  |||||||  ||||||||||||||||| ||  |||||||||| ||    
T  30065867 tgtcaattagtttatttgcctccgcaaaagtgttgtccactttgctcatccaattttggacaacattttcaatctcttctccgttccttctagcctcatc 30065768  T
Q  105 aactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaattga 204  Q
    |||  || |||||||||| | |||| |||| || | ||||||||||||||||| |||| ||| || || ||||||||||||||||||||||| |||||||    
T  30065767 aacagtgtgttgcacactgttttttattccctccatcttttggacatcagttttcatctttttaaggtagtccttgtagtagagtatgtaacgaaattga 30065668  T
Q  205 cg 206  Q
    ||    
T  30065667 cg 30065666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 30787927 - 30787728
Alignment:
Q  7 tcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcctcgtcaa 106  Q
    |||||||||||||| |||| | |||  |||||||||||  |||||||||  |  |||||||  ||||||||||||||||| ||  |||||||||  || |    
T  30787927 tcaataagtttcttagccttaccaagagtgttgtccactttgttcagccaattttggacaatattttcaatctcttctccgttccttctagccttatcca 30787828  T
Q  107 ctttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaattgacg 206  Q
    |  || ||||||  |||||||||| |||||| ||||||| ||| || |||  |||||||| || |||| |||||||||||||||||||||||||||||||    
T  30787827 cggtgtgttgcatgctatcttttgatccttccagctttttgacctcggttctcatcctttcaaggttgcccttgtagtagagtatgtaaccaaattgacg 30787728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 30009370 - 30009169
Alignment:
Q  5 tgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcctcgtc 104  Q
    ||||||| ||||| |||||||| ||||  |||||||||||  || ||| ||  |  |||||||  ||||||||||||||||| ||  |||||||||| ||    
T  30009370 tgtcaattagtttatttgcctccgcaaaagtgttgtccactttgctcatccaattttggacaacattttcaatctcttctccgttccttctagcctcatc 30009271  T
Q  105 aactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaattga 204  Q
    |||  || |||||||||| | |||  |||| || | ||| ||||||||||||| |||| ||| || || ||||||||||||||||||||||| |||||||    
T  30009270 aacagtgtgttgcacactgtttttaattccctccaacttctggacatcagttttcatctttttaaggtagtccttgtagtagagtatgtaacgaaattga 30009171  T
Q  205 cg 206  Q
    ||    
T  30009170 cg 30009169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 30249577 - 30249378
Alignment:
Q  7 tcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcctcgtcaa 106  Q
    |||||||||||||| |||| | |||  ||| ||||| |  ||||||||| || ||| ||||  |||||||||||||  || ||  |||||||||| ||||    
T  30249577 tcaataagtttcttagccttaccaagagtgctgtccgctttgttcagccagttctgcacaatattttcaatctcttgcccgttccttctagcctcatcaa 30249478  T
Q  107 ctttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaattgacg 206  Q
    |  || ||||||| |||||||||| |||||| || |||| ||| ||||||  |||||||| || |||   ||||||||||||||||||||||||||||||    
T  30249477 cggtgtgttgcacgctatcttttgatccttccagatttttgacctcagttctcatcctttcaaggtttctcttgtagtagagtatgtaaccaaattgacg 30249378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 30020653 - 30020447
Alignment:
Q  1 tcactgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcct 100  Q
    ||||||||||||| ||  ||||| || ||||| |||||||||||  |||||| ||  | ||||||||  ||||||||||||||||| ||  |||| ||||    
T  30020653 tcactgtcaataatttcatttgcatctgcaacagtgttgtccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctggcct 30020554  T
Q  101 cgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaa 200  Q
    | ||||| ||| |||||| | | |||||| |||| || |  | |||||||||||||  |||| |   || |||| ||||||| |||||||||||||||||    
T  30020553 catcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaa 30020454  T
Q  201 ttgacga 207  Q
    |||||||    
T  30020453 ttgacga 30020447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 30040042 - 30040248
Alignment:
Q  1 tcactgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcct 100  Q
    ||||||||||||||||  |||||||| ||||| |||||||||||  |||||| ||  | ||||||||  ||||||||||||||||| ||  ||||  |||    
T  30040042 tcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctgacct 30040141  T
Q  101 cgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaa 200  Q
    | ||||| ||| |||||| | | |||||| |||| || |    |||||||||||||  ||||||   || |||| ||||||| || ||||||||||||||    
T  30040142 catcaacattgtgttgcaaaatgtcttttattccctccacacgttggacatcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaa 30040241  T
Q  201 ttgacga 207  Q
    |||||||    
T  30040242 ttgacga 30040248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 30109520 - 30109726
Alignment:
Q  1 tcactgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcct 100  Q
    ||||||||||||||||  |||||||| ||||| |||||||||||  |||||| ||  | ||||||||  ||||||||||||||||| ||  ||||  |||    
T  30109520 tcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctgacct 30109619  T
Q  101 cgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaa 200  Q
    | ||||| ||| |||||| | | |||||| |||| || |    |||||||||||||  ||||||   || |||| ||||||| || ||||||||||||||    
T  30109620 catcaacattgtgttgcaaaatgtcttttattccctccacacgttggacatcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaa 30109719  T
Q  201 ttgacga 207  Q
    |||||||    
T  30109720 ttgacga 30109726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 30121219 - 30121425
Alignment:
Q  1 tcactgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcct 100  Q
    ||||||||||||| ||  ||||| || ||||| |||||||||||  |||||| ||  | ||||||||  ||||||||||||||||| ||  |||| ||||    
T  30121219 tcactgtcaataatttcatttgcatctgcaacagtgttgtccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctggcct 30121318  T
Q  101 cgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaa 200  Q
    | ||||| ||| |||||| | | |||||| |||| || |  | |||||||||||||  |||| |   || |||| ||||||| |||||||||||||||||    
T  30121319 catcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaa 30121418  T
Q  201 ttgacga 207  Q
    |||||||    
T  30121419 ttgacga 30121425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 30234180 - 30234386
Alignment:
Q  1 tcactgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcct 100  Q
    ||||||||||||||||  |||||||| ||||| |||||||||||  |||||| ||  | ||||||||  ||||||||||||||||| ||  ||||  |||    
T  30234180 tcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctgacct 30234279  T
Q  101 cgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaa 200  Q
    | ||||| ||| |||||| | | |||||| |||| || |    |||||||||||||  ||||||   || |||| ||||||| || ||||||||||||||    
T  30234280 catcaacattgtgttgcaaaatgtcttttattccctccacacgttggacatcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaa 30234379  T
Q  201 ttgacga 207  Q
    |||||||    
T  30234380 ttgacga 30234386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 30102990 - 30103196
Alignment:
Q  1 tcactgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcct 100  Q
    ||||||||||||| ||  ||||| |||||||| ||| |||||||  |||||| ||  | ||||||||  |||||||||||||| || ||  |||| ||||    
T  30102990 tcactgtcaataaattcatttgcatcagcaacagtgatgtccactgtgttcaaccaattctggacaatattttcaatctcttcaccgttccttctggcct 30103089  T
Q  101 cgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttccatcctttgaaagttgtccttgtagtagagtatgtaaccaaa 200  Q
    | ||||| ||| |||||| | | |||||| |||| || |  | |||||||||||||  |||| |   || |||| ||||||| |||||||||||||||||    
T  30103090 catcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaa 30103189  T
Q  201 ttgacga 207  Q
    |||||||    
T  30103190 ttgacga 30103196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 30079059 - 30078904
Alignment:
Q  1 tcactgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcct 100  Q
    ||||||||||||||||  |||||||| ||||| |||||||||||  |||||| ||  | ||||||||  ||||||||||||||||| ||  |||| ||||    
T  30079059 tcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctggcct 30078960  T
Q  101 cgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtt 156  Q
    | ||||| ||| |||||| | | |||||| |||| || |  | |||||||||||||    
T  30078959 catcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagtt 30078904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 30277179 - 30277055
Alignment:
Q  5 tgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcctcgtc 104  Q
    |||||||||||||||| ||||||||||  |||| ||  ||  ||||||||| || |||||| |  ||||||||||||||||||||   ||||||||| ||    
T  30277179 tgtcaataagtttcttggcctcagcaatggtgtagtttactttgttcagccagttctggacgatattttcaatctcttctccattccgtctagcctcatc 30277080  T
Q  105 aactttgcgttgcacactatctttt 129  Q
    |||  || |||||||||| ||||||    
T  30277079 aacagtgtgttgcacactgtctttt 30277055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 30136236 - 30136391
Alignment:
Q  1 tcactgtcaataagtttctttgcctcagcaaccgtgttgtccacactgttcagccggtcctggacaaacttttcaatctcttctccattatttctagcct 100  Q
    ||||||||||||| ||  ||||| || ||||| |||||||||||  |||||| ||  | ||||||||  |||||||||||||| || ||  |||| ||||    
T  30136236 tcactgtcaataatttcatttgcatctgcaacagtgttgtccactgtgttcaaccaattctggacaatattttcaatctcttccccgttccttctggcct 30136335  T
Q  101 cgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtt 156  Q
    | ||||| ||| |||||| | | |||||| |||| || |  | |||||||||||||    
T  30136336 catcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagtt 30136391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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